LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g01655	ATGGATGGCCGAAGGCATTCTGTTGATGTTCCAATTTCTAAAACTCTTGTAGCATTGAGAAGAGTCAGATCATTGAGGGATCCATCAACTAATGGTATTAGCAAGCTCTCTCCTTTGATGGATGATGGACATTGGGAAAATGGTTCCGGTAATGGAATTTCTCTGAGGTTCCTAAATGCTTCTCATGCTTGTGATTCTGATCATGATGGTTTTTTAAGATCAAAGAATTTAGATATTAAGGGACTAAAAGAGGAGGATAATACTAATTTTGAATTGGATTGTGGTCTGTTGAACTCTAAGATGAACTATTATGGGATCTCATGTCATGAAGGGCAGAAACATGATGATGAACTAGTTTACTCTGACTCTGATCCTAAGCAGCAAGGATTTTCTGGAAATAAATCACCAAATGAAAGCTGTTGTAGCAACCTTGGAGGTAGAGGATTGGATTTGGCTTCTATCATGCCTCCTAGTAATCATTTGAAGGATGGGGAATCATACTATTTATCAACTGCATTATCATCACAATTGGGGAGGATAGATCACTCAAAGTCAACCAGAAAATCACTGCGCAAGAATCAAGTGAAACCATCTGAAGTGATGGGTGATAATGCAAGCCATGTTGGGAGTCCATGTCTTTCTGTTCGTGATGCTCTCTCAGCTCATAGTGCCTCAGCACATGCAACTCAAGATGTTGATGTTTTTGTTAATCACCATGGATGTGGAATAAGCTGTTGTTGGTCAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCTGAAACAGAAGATCTTCCCTTGATATTGCAGCATGTTAATGAGACAGATCATCATGGACATAAAAGCATGAGACACATTGGTGGTGAAATTAGTCCAACTTTGGAAACTCCCAGAAGTTTATCCATGAAATTCAAGCCAAAATCTTTCAGTGATTTGGTTGGACAAAATGTGGTTGGGAAGTCACTTTTGGGGGCTATCTATAGAGGAAGGATAGCATTATTTTATCTCTTCCATGGTCCCCGTGGCACAGGGAAGACCTCTGCATCCAGGATATTTGCTGCTGCACTGAATTGCCTCTCCCTTGAGGAGCAAAGGCCATGTGGTCTGTGTAGAGAATGTGTTGTGTTCTTTTCTGGAAGAAGTAAAGATGTTAAGGAAGTGGACTCATTGAGAATCAATCGCGTGGACAAGGTTAAATCCCTTGTTAAGAATGCATGCATCCCTCCAGTTTCCTCACGGTTTAAGGTGTTCATTATTGATGAGTGCCAATTATTGCATGGGGAAACATGGGCGAGTCTTTTGAACAGCCTAGAGAATGTTTCTCAACATGCAGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCGAGGTGCAGTTTCCCGAGCTCAAAGGTACCACTTTGCAAAAATTAAAGATGCTGACATTGCAAGCAGATTGGAAAAAATTTGTGTTGAAGAAGGGCTTGAATTTGAACAAGATGCTTTGGATTTTATTGCTGCTAAATCCCATGGTTCCCTTAGGGATGCAGAAATGATGCTTGATCAGCTGAGTTTGCTTGGTAAAAAAATCACAATTTCCTTAGTCTATGAGCTTACTGGGGTCATTTCTGATGATGAATTGCTTGAGTTGCTGGACCTGGCTTTGTCTTCTGACACTTCAAATACAGTGATAAGGGCCCGGGAGTTGATGAGATCAAGGATAGATCCTTTACAACTTATATCACAGCTAGCAAATCTTATTATGGATATCCTTGCAGGGAAATGTGAACTTGGTGGTTCTGAAATCAGAAGAAGATTTTCTAGTAGACATACCTCGGAAGCAGACCTGCAGAAACTTAGTCACGCATTAAGAATACTTTCTGAAACAGAGAAGCAGTTGAGAATTTCTAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTCCAGTTAAGCTCTGTAGAATGTTCATCTGGGGATGCAAATGATACCAAGTTATGTGTGAGAGCTGCTTCTGATAGAGGTGGGCTTGACTTCTTTGTCCTTTTGTTATTTTTCATTTCCCCAACTTCCTTAGCAGAAGATGGTGATTTATGCAGCACATCTTCTACAGGGGAGAGCTTGAAGCATGTTGCTACAGGTCAGTGTGATGAGAAGTCATATGGATTAGGATTGCAGGAGGATCACAATGGGACATTGGATTCCATATGGTATAAAGCTACAGAGATATGTCAATCTAGTAGGCTAAGAACTTTTCTTAAGAAGCAAGGGAAGTTGTCTTCAGTTTGTATTGATCAAGGTCTTGCAGTTGTTGAGTTGGAGTTCCACCACCGTGACTATGTAGCTAGGGCTGAGAAGTCATGGAAACTGATTGCAAGTTCCCTGCAGTTCATATTGGGTTGTAACATTGAGCTCAGAATCAATTATGTACCTTCGGATTCTAAGCATGCTAAATTGAAGAGGTCATCTTTCAATTTATTTAGTTGTTCCCGCAGAATTCTAAGGAAGTCATTATCATCTGATGGACAAGGAAGTGAATCAGACTATGCTGATTACACCTCTCAAAAGCCAATGACAAAGGATCAAACTCTAACTTGTTCCTCGGATTGTGGATCGCGGGTGCCACCACTTGAGTCCTACCCTGGAATGCAGGTTGTAACAACTTTGAGAAGCTGTGAAGGGAATTTGCTAAGCTCAGGGAAGATATTCTTGAATAGGTCATGTCAAGAGACTCCAAAGATTTCTTTTTCTAGAGTTGATTCTCTCAAGGAAGAGGGATGCAATTATGAACATCTTGCTTCATCAACCCTTGATTTAGATAATCAGTCTAACTGTTTTCCTCGATCCCTCTGGCTTCATAGAAAGTTCTCTTCTTCACATGCATCACAGCAGAAGGATTTTGTTTTATCAATCTCCAAGTACCAATGTTCTGAGACTTGTAGCTATGATAAGGAGCCCTGTGTTTTCCCCCACAGCTCTAACAACTATACCAAAGCTGTTGAGGAAAAGTAG	2994	0.4051	MDGRRHSVDVPISKTLVALRRVRSLRDPSTNGISKLSPLMDDGHWENGSGNGISLRFLNASHACDSDHDGFLRSKNLDIKGLKEEDNTNFELDCGLLNSKMNYYGISCHEGQKHDDELVYSDSDPKQQGFSGNKSPNESCCSNLGGRGLDLASIMPPSNHLKDGESYYLSTALSSQLGRIDHSKSTRKSLRKNQVKPSEVMGDNASHVGSPCLSVRDALSAHSASAHATQDVDVFVNHHGCGISCCWSKSPRFRESNHYSETEDLPLILQHVNETDHHGHKSMRHIGGEISPTLETPRSLSMKFKPKSFSDLVGQNVVGKSLLGAIYRGRIALFYLFHGPRGTGKTSASRIFAAALNCLSLEEQRPCGLCRECVVFFSGRSKDVKEVDSLRINRVDKVKSLVKNACIPPVSSRFKVFIIDECQLLHGETWASLLNSLENVSQHAVFVMITPDLDKLPRGAVSRAQRYHFAKIKDADIASRLEKICVEEGLEFEQDALDFIAAKSHGSLRDAEMMLDQLSLLGKKITISLVYELTGVISDDELLELLDLALSSDTSNTVIRARELMRSRIDPLQLISQLANLIMDILAGKCELGGSEIRRRFSSRHTSEADLQKLSHALRILSETEKQLRISKNQTTWFTAALLQLSSVECSSGDANDTKLCVRAASDRGGLDFFVLLLFFISPTSLAEDGDLCSTSSTGESLKHVATGQCDEKSYGLGLQEDHNGTLDSIWYKATEICQSSRLRTFLKKQGKLSSVCIDQGLAVVELEFHHRDYVARAEKSWKLIASSLQFILGCNIELRINYVPSDSKHAKLKRSSFNLFSCSRRILRKSLSSDGQGSESDYADYTSQKPMTKDQTLTCSSDCGSRVPPLESYPGMQVVTTLRSCEGNLLSSGKIFLNRSCQETPKISFSRVDSLKEEGCNYEHLASSTLDLDNQSNCFPRSLWLHRKFSSSHASQQKDFVLSISKYQCSETCSYDKEPCVFPHSSNNYTKAVEEK.	998

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g01655	997	Pfam	DNA polymerase III, delta subunit	316	472	-	-
	Seca11g01655	997	NCBIfam	DNA polymerase III subunit gamma/tau	299	645	IPR012763	GO:0003887\|GO:0005524\|GO:0006260\|GO:0009360
	Seca11g01655	997	MobiDBLite	consensus disorder prediction	124	139	-	-
	Seca11g01655	997	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	322	522	IPR027417	-
	Seca11g01655	997	SMART	AAA_5	331	474	IPR003593	GO:0016887
	Seca11g01655	997	SUPERFAMILY	post-AAA+ oligomerization domain-like	542	643	IPR008921	GO:0003677\|GO:0006260
	Seca11g01655	997	MobiDBLite	consensus disorder prediction	832	862	-	-
	Seca11g01655	997	FunFam	DNA polymerase III subunit gamma/tau	473	535	-	-
	Seca11g01655	997	CDD	HLD_clamp_pol_III_gamma_tau	472	535	IPR045085	-
	Seca11g01655	997	MobiDBLite	consensus disorder prediction	179	207	-	-
	Seca11g01655	997	MobiDBLite	consensus disorder prediction	117	139	-	-
	Seca11g01655	997	Gene3D	-	473	534	-	-
	Seca11g01655	997	FunFam	Protein STICHEL-like 1 isoform C	536	649	-	-
	Seca11g01655	997	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	300	730	-	-
	Seca11g01655	997	Gene3D	-	293	470	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g01655	Seca-Chr11	19009646	19014840	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g01655	290	628	Core DNA Replication Machinery Family	AT1G21690	24.490	1.75e-13	71.2

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g01655	-		-	pcin:129308301	1245.34