Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01638 ATGTCTATCACAACCATGCCTTCCTTCAAGTCCCTCACAGTGGCGGAATCGTGCCTTCTCTCTCAACCCTCACTCTTTCACACCAAAACTAAATACCCATTTACCTCAATTTCCTTTAAGCCCCTCAAGCTGCACCACCAATTACCATCACCCTCTCTCTCCCTCACCAAGAGGACTTCCTCTCTCCTCACATTTGTAGCACAGACTTCGGATTGGGCTCAACAAGAAGGAGAAAAAGAAGAAGATGGAACCCTATGGGAGAACCAAGGGGAACCCACATGGGGAAATGAAGATGCTGATGAAACCGAAGGAAACGAGGATGGTGAAGGTGAGATTTTTGGTGACGGGGGTTATGCTGAGCCATCTGAAGATTTGAAGATCTTTGTTGGGAACTTGCCATGGAATGTTGACAGTGAGAGATTGGCCATGCTTTTTGAGCAGGCTGGGACTGTGGAGGTTGCTGAGGTTATTTATAACAGGGCCACTGACAGAAGTCGTGGGTTTGGATTTGTAACCATGAGTACAGTTGAAGAAGTTGAGAAGGCTGTGGAGAAGTTCAGTGGCTACGTAAGTTGGATGTTTATATTTTATTTTGTGTGA 600 0.46 MSITTMPSFKSLTVAESCLLSQPSLFHTKTKYPFTSISFKPLKLHHQLPSPSLSLTKRTSSLLTFVAQTSDWAQQEGEKEEDGTLWENQGEPTWGNEDADETEGNEDGEGEIFGDGGYAEPSEDLKIFVGNLPWNVDSERLAMLFEQAGTVEVAEVIYNRATDRSRGFGFVTMSTVEEVEKAVEKFSGYVSWMFIFYFV. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01638 199 PANTHER OS02G0815200 PROTEIN 26 189 - -
Seca11g01638 199 SMART rrm1_1 126 196 IPR000504 GO:0003723
Seca11g01638 199 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 125 188 IPR000504 GO:0003723
Seca11g01638 199 SUPERFAMILY RNA-binding domain, RBD 122 189 IPR035979 GO:0003676
Seca11g01638 199 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 127 189 IPR000504 GO:0003723
Seca11g01638 199 MobiDBLite consensus disorder prediction 71 116 - -
Seca11g01638 199 MobiDBLite consensus disorder prediction 94 110 - -
Seca11g01638 199 Gene3D - 66 193 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01638 Seca-Chr11 18784844 18785804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01638 120 188 Eukaryotic Initiation Factors Gene Family AT1G22760 36.232 2.38e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01638 - - gmx:100811487 194.897