Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01627 ATGGAGATGGAACGCGTCTTCGAATTTCCTCACACCCACATGGATCGGCGCCCACGGAAGAGAGCGAGGTTGGGCTGGGATGTTCCTGAGGTACCCAAGGCTCAGGTAGGATTGTTTTGTGGACAAGAGGTTGGAACTATTTCAAGCTATGCTCCTTCAAGGGGTCCCTCAGAACATACCACTAGTTCTCTATTTGTTAAGGGAGGTTCTCGAAATGGTTCTCCCCCTCGGCGAGATGATGACAAAGATGGGCATTACATGTTTGCGCTCGGAGAAAATTTAACTTCTCGCTATAAGATCCATAGCAAAATGGGTGAAGGAACATTTGGACAGGTCTTGGAATGCTGGGACAGAGAAAGGAAGGAAATGGTTGCCATAAAAATTGTCCGTGGGATAAAGAAGTATCGAGAAGCAGCCATGATAGAAATTGAGATGTTGCAACAGCTTGGTAAACATGATAAGGGAGGCAATCGTTGTGTGCAAATACGGAACTGGTTTGACTATCGTAATCATATATGTATTGTGTTTGAGAAACTTGGACCAAGCTTATACGATTTTCTTCGGAAAAACAATTATCGCTCATTTCCCATTGACCTTGTCCGTGAGATTGGCAGACAACTATTGGAATGTATTGCATTCATGCATGATTTACGCATGATTCATACTGATCTGAAGCCTGAAAACATACTGCTAGTTTCACCAGAATATGTCAAAGTTCCTGACTACAAGGTTTGTTTGCACCCTAATTCCTATTTCAAGAGAGTGCCCAAGTCAAGTGCTATCAAGGTTATTGATTTTGGCAGCACCACTTATGAACGAGAAGATCAGAATTACATTGTATCAACTCGTCATTATAGAGCACCTGAAGTTATCCTTGGACTTGGCTGGAGTTATCCATGTGATATATGGAGTGTGGGATGTATATTGGTAGAATTATGCACGGGTGAAGCTTTGTTTCAGACTCATGAGAATTTAGAGCACCTTGCCATGATGGAGAGGGTTCTTGGTCCATTACCTCAGCATATGTTGAAGAGAGCTGAGTAA 1044 0.4282 MEMERVFEFPHTHMDRRPRKRARLGWDVPEVPKAQVGLFCGQEVGTISSYAPSRGPSEHTTSSLFVKGGSRNGSPPRRDDDKDGHYMFALGENLTSRYKIHSKMGEGTFGQVLECWDRERKEMVAIKIVRGIKKYREAAMIEIEMLQQLGKHDKGGNRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNNYRSFPIDLVREIGRQLLECIAFMHDLRMIHTDLKPENILLVSPEYVKVPDYKVCLHPNSYFKRVPKSSAIKVIDFGSTTYEREDQNYIVSTRHYRAPEVILGLGWSYPCDIWSVGCILVELCTGEALFQTHENLEHLAMMERVLGPLPQHMLKRAE. 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01627 347 Gene3D Transferase(Phosphotransferase) domain 1 152 346 - -
Seca11g01627 347 FunFam Serine/threonine-protein kinase AFC2 85 178 - -
Seca11g01627 347 MobiDBLite consensus disorder prediction 49 69 - -
Seca11g01627 347 SUPERFAMILY Protein kinase-like (PK-like) 85 344 IPR011009 -
Seca11g01627 347 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Seca11g01627 347 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Seca11g01627 347 ProSiteProfiles Protein kinase domain profile. 98 347 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01627 347 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 346 - -
Seca11g01627 347 CDD PKc_CLK 85 346 - -
Seca11g01627 347 SMART serkin_6 98 344 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01627 347 Pfam Protein kinase domain 98 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01627 347 MobiDBLite consensus disorder prediction 49 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01627 Seca-Chr11 18500848 18504735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01627 262 342 EF-hand Containing Proteins AT5G22840 41.379 1.42e-14 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Seca11g01627 Pkinase 3.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01627 K08287 - gmx:100804452 679.093