Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01618 ATGGCAATTTCTTCAGCTTCCTCAAAGCTCACATTCCCACATGTCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCTCCCTCTCTCCAATTGCTTCTTCCTCAGAACTCACATCCCCACAACCCACCTTTCCTCTTCCTTCATCAACCCCTCCACAGTCCTCCTCAACCCACCACAATCCTCCACCCCCAACCGCCGCCGCTCCTTCACCGTACGCGCCGCTCGAGGCAAATTCGAGCGCAAGAAGCCCCATGTCAACATCGGTACCATCGGCCACGTCGACCACGGCAAGACCACCCTCACCGCCGCCCTCACCATGGCCCTCGCCTCCCTCGGCAACAGCGCCCCCAAAAAATACGACGAAATCGACGCCGCACCGGAAGAGCGAGCTCGCGGCATCACCATCAACACCGCCACCGTCGAATACGAAACCGAGAGCCGCCACTACGCCCACGTCGACTGCCCTGGCCACGCTGATTACGTCAAGAACATGATCACCGGCGCCGCACAGATGGACGGCGCCATCCTCGTCGTTTCCGGCGCCGACGGACCCATGCCGCAGACCAAGGAGCACATCCTCTTGGCGAAACAAGTCGGTGTTCCCAACATGGTGGTGTTTCTGAACAAACAGGACCAGGTTGATGATGAAGAGCTTCTGCAACTTGTTGAATTAGAGGTTCGTGAGCTTCTATCTTCTTATGAATTCCCTGGGGATGATGTTCCAATTGTTTCTGGTTCTGCTTTGTTGGCTTTGGAAGCTTTGATGGCAAACGCTGCAATTAAGCGTGGGGAAAATCAGTGGGTTGATAAAATTTATGAGCTTATGGATTCTGTGGATAGCTACATTCCTATCCCTCAGCGCCAAACTGATCTTCCCTTTTTGCTTGCCATTGAAGATGTGTTCTCCATCACTGGTCGTGGAACTGTGGCCACTGGTCGTGTTGAGAGGGGTACCATTAGGGTTGGTGATACAGTTGATATTGTTGGTGTGAGGGAAACTAGGAACACTACTGTGACTGGGGTGGAAATGTTTCAGAAGATTCTGGATGAGGCCATGGCTGGGGATAATGTGGGGTTGTTGTTGAGAGGTATTCAGAAGGTTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCCGGAACCATTACACCTCATACTAAGTTTTCTGCAATTGTGTATGTGTTGAAGAAGGAAGAAGGTGGCAGGCACTCACCATTCTTTGCTGGGTATAGGCCACAGTTCTACATGAGGACTACTGATGTTACTGGCAAAGTGCTCAACATTATGAATGACAAGGATGAGGAGTCCAAGATGGTTATGCCGGGAGACCGGGTTAAGATGGTGGTTGAACTTATAGTACCTGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAAACTGTTGGAGCTGGTGTTATCCAATCGATCATTGAGTAA 1449 0.5135 MAISSASSKLTFPHVSPSPSPSPSPSLPLSNCFFLRTHIPTTHLSSSFINPSTVLLNPPQSSTPNRRRSFTVRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIVSGSALLALEALMANAAIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIRVGDTVDIVGVRETRNTTVTGVEMFQKILDEAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVLNIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE. 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01618 482 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 309 IPR027417 -
Seca11g01618 482 NCBIfam elongation factor Tu 75 482 IPR004541 GO:0003746|GO:0005525|GO:0006414
Seca11g01618 482 MobiDBLite consensus disorder prediction 1 15 - -
Seca11g01618 482 Gene3D Translation factors 289 417 - -
Seca11g01618 482 Pfam Elongation factor Tu domain 2 308 376 IPR004161 GO:0005525
Seca11g01618 482 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 381 481 IPR009001 -
Seca11g01618 482 NCBIfam small GTP-binding protein domain 86 218 IPR005225 GO:0005525
Seca11g01618 482 SUPERFAMILY Translation proteins 288 384 IPR009000 -
Seca11g01618 482 Gene3D - 75 286 IPR027417 -
Seca11g01618 482 FunFam Elongation factor Tu 74 286 - -
Seca11g01618 482 Pfam Elongation factor Tu GTP binding domain 83 284 IPR000795 GO:0003924|GO:0005525
Seca11g01618 482 CDD EF_Tu 84 286 IPR041709 -
Seca11g01618 482 MobiDBLite consensus disorder prediction 1 26 - -
Seca11g01618 482 PRINTS GTP-binding elongation factor signature 87 100 IPR000795 GO:0003924|GO:0005525
Seca11g01618 482 PRINTS GTP-binding elongation factor signature 167 178 IPR000795 GO:0003924|GO:0005525
Seca11g01618 482 PRINTS GTP-binding elongation factor signature 204 213 IPR000795 GO:0003924|GO:0005525
Seca11g01618 482 PRINTS GTP-binding elongation factor signature 151 161 IPR000795 GO:0003924|GO:0005525
Seca11g01618 482 PRINTS GTP-binding elongation factor signature 131 139 IPR000795 GO:0003924|GO:0005525
Seca11g01618 482 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 124 139 IPR031157 -
Seca11g01618 482 PANTHER ELONGATION FACTOR TU-RELATED 72 481 - -
Seca11g01618 482 FunFam Elongation factor Tu 289 417 - -
Seca11g01618 482 CDD EFTU_II 294 380 IPR033720 -
Seca11g01618 482 CDD EFTU_III 383 477 - -
Seca11g01618 482 Gene3D Translation factors 421 481 - -
Seca11g01618 482 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 83 287 IPR000795 GO:0003924|GO:0005525
Seca11g01618 482 Hamap Elongation factor Tu [tuf]. 74 482 IPR004541 GO:0003746|GO:0005525|GO:0006414
Seca11g01618 482 FunFam Elongation factor Tu 421 481 - -
Seca11g01618 482 Pfam Elongation factor Tu C-terminal domain 381 480 IPR004160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01618 Seca-Chr11 18296611 18298059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01618 81 480 Eukaryotic Initiation Factors Gene Family AT5G60390 29.318 3.96e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01618 K02358 - gmx:100791320 783.097