LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g01607	ATGGCAACACTAAAACCCCTGTTCCATTTCTGGTTTTTCCTCCAACTCCAACTCTTCTTCCCTCCCATTTTCGCCCTCGATTTCCTGTTCAATTCCTTCACCAGCATCACCAACCTCACTCTCATCAACGATGCTCGAATCGACGCCTCCGTTATCCGCATGACCAACGACTCCAACCAATACTCTCTGGGTCGAGCTTTCTACCCCATCAAAGTCCCCATGAAAACACAACAACCCTCCCCCAATTCCAATTCCTCAACCATTTCTTCCTTCTCCACTTCCTTTGTTTTCTCCATCTTGCCACAGATCGCAACTAGCCCTGGCTTCGGTCTCGCCTTCGTCCTCTGCAACACCACTTCCCCTCCCGGAGCACTCGCTAGCCAGTACTTCGGTCTCTTCACTAACGCAACCACCCCAACCGTTTTCCCCCTTCTCGCCGTCGAATTCGACACCGGTCAAAACCCTGAGTTCAACGACATCGACGACAACCACATCGGAATCGACCTCGACAACATCGAGTCAAAAATCTCAACCTCTGCCGGGTACTACAATTCCAGCGGCGGATTCGTCCCGTTCCGTATGCGCAGTGGTGAGAACGTCCGCGCTTGGATCGAATTCAACGGCGGGAGTTTGGAGATAAACGTGACGGTTGCTCCGATCGGTGTTTCACGCCCTTTGAAGCCAACGCTCTCGTATAAAAATCCAGAGATGGCTAATTACTTGTCTTCTGATATGTATGTAGGGTTTTCCGCTTCGAAAACGAATTGGATCGAGGCGCAGAGAGTTCTAGCATGGAGCTTCAGCGATTCAGGGGCTGCGAGGGAGATAAACACAACGAACCTTCCAGTGTTCAGGCTAGAAACGACGTCGTCTTCGCTTTCTGGGGGAGCAATTGCAGGGATTGTGGTTGGTTGTTTTGCGTTTGTGGTGATTTGTGCATCAGGGTTTTACTTGTGGTGGCGAAAAAGGAAAATGAAAGAGCAAGAGGAAGATGAAGTAGAAGAGTGGGAGCTTGAGTATTGGCCACACAGATTCTCCTACGAGGAACTAAGCGTGGCTACAGAGGAATTCCATAGAGACCACCTTCTAGGTTCTGGAGGGTTCGGAAGAGTATACAAAGGGACACTATCGAATAAGACCCAAGTTGCAGTCAAATGCGTCAACCACGATTCCAAACAAGGGTTGCGAGAATTCATGGCGGAAATTTCAAGTATGGGGAGGTTGCAGCATAAGAATTTGGTTCAAATGCGAGGATGGTGCAGAAAAGGGAACCAGCTTATGCTAGTTTATGATTACATGCCCAATGGAAGTCTCAACAAGTGGGTATTTGATAAACCCGCGAAGCTTTTGGGATGGGAACAACGCCGGAAAATCCTTGTCGACGTGGCAGAGGGGTTGAACTATCTTCACCATGGTTGGGACCAGGTTGTGATTCATAGAGACGTTAAATCTAGTAACATATTGTTGGATGCAGAAATGAGAGGAAGGCTAGGTGATTTTGGTTTGGCGAAGCTTTACCAACATGGGGAAATTCCCAACACCACGCGTGTGGTGGGGACTTTGGGGTATTTGGCGCCGGAGATAGCGACGGTGGCGGCGCCGACTTCGGCTAGCGATGTGTATAGTTTTGGGGTGGTGTTGTTGGAGGTTGCGTGTGGACGGAGGCCTATAGAGACTTCGGTGCCGGAGGAGGAAGTGGTGCTCATTGATTGGGTGAGGGATTTGTATGCTAAAGGGTGTGCTGTTGAGGCTGCGGATCCTAGGATTAAGGGTGAGTATGATGTGGGAGATATGGAGATGGTGTTGAAGCTTGGGTTGGCTTGTTGCCACCCTGAGCCACTGAGGAGACCCACCATGAAGGAAGTGGTTGCGCTTCTTCTTGGGGAGGATATAGCGGAGGCGCCCGGGAAAATGTTGTCTGAGTTGGCTCGTGGTGATGATGACGGTGCCGGCGGGGAATTGGAAGAGGCGGCGCCTTTGCAACCCACCACTCGGATTTGA	2001	0.5052	MATLKPLFHFWFFLQLQLFFPPIFALDFLFNSFTSITNLTLINDARIDASVIRMTNDSNQYSLGRAFYPIKVPMKTQQPSPNSNSSTISSFSTSFVFSILPQIATSPGFGLAFVLCNTTSPPGALASQYFGLFTNATTPTVFPLLAVEFDTGQNPEFNDIDDNHIGIDLDNIESKISTSAGYYNSSGGFVPFRMRSGENVRAWIEFNGGSLEINVTVAPIGVSRPLKPTLSYKNPEMANYLSSDMYVGFSASKTNWIEAQRVLAWSFSDSGAAREINTTNLPVFRLETTSSSLSGGAIAGIVVGCFAFVVICASGFYLWWRKRKMKEQEEDEVEEWELEYWPHRFSYEELSVATEEFHRDHLLGSGGFGRVYKGTLSNKTQVAVKCVNHDSKQGLREFMAEISSMGRLQHKNLVQMRGWCRKGNQLMLVYDYMPNGSLNKWVFDKPAKLLGWEQRRKILVDVAEGLNYLHHGWDQVVIHRDVKSSNILLDAEMRGRLGDFGLAKLYQHGEIPNTTRVVGTLGYLAPEIATVAAPTSASDVYSFGVVLLEVACGRRPIETSVPEEEVVLIDWVRDLYAKGCAVEAADPRIKGEYDVGDMEMVLKLGLACCHPEPLRRPTMKEVVALLLGEDIAEAPGKMLSELARGDDDGAGGELEEAAPLQPTTRI.	667

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g01607	666	Pfam	Protein kinase domain	357	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g01607	666	MobiDBLite	consensus disorder prediction	643	666	-	-
	Seca11g01607	666	Gene3D	Phosphorylase Kinase; domain 1	318	432	-	-
	Seca11g01607	666	CDD	lectin_legume_LecRK_Arcelin_ConA	26	271	IPR001220	GO:0030246
	Seca11g01607	666	Gene3D	Transferase(Phosphotransferase) domain 1	433	635	-	-
	Seca11g01607	666	ProSitePatterns	Protein kinases ATP-binding region signature.	363	385	IPR017441	GO:0005524
	Seca11g01607	666	SMART	serkin_6	357	626	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g01607	666	ProSitePatterns	Legume lectins beta-chain signature.	145	151	IPR019825	-
	Seca11g01607	666	FunFam	L-type lectin-domain containing receptor kinase S.4	433	637	-	-
	Seca11g01607	666	Pfam	Legume lectin domain	26	281	IPR001220	GO:0030246
	Seca11g01607	666	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	477	489	IPR008271	GO:0004672\|GO:0006468
	Seca11g01607	666	CDD	STKc_IRAK	363	626	-	-
	Seca11g01607	666	ProSiteProfiles	Protein kinase domain profile.	357	632	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g01607	666	FunFam	L-type lectin-domain containing receptor kinase S.1	342	432	-	-
	Seca11g01607	666	FunFam	L-type lectin-domain containing receptor kinase S.4	24	275	-	-
	Seca11g01607	666	PANTHER	-	40	628	-	-
	Seca11g01607	666	SUPERFAMILY	Protein kinase-like (PK-like)	334	626	IPR011009	-
	Seca11g01607	666	Gene3D	-	24	290	-	-
	Seca11g01607	666	SUPERFAMILY	Concanavalin A-like lectins/glucanases	24	284	IPR013320	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g01607	Seca-Chr11	18203667	18205667	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g01607	25	628	Receptor kinase-like Gene Family	AT1G15530	68.966	0.0	833

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Seca11g01607		Pkinase	2.3e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g01607	-		-	gmx:100780660	1067.37