Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01600 ATGGGTCGCCATTCTTGTTGTGTAAAGCAAAAATTGAGGAAAGGTTTATGGTCCCCTGAAGAAGATGAGAAGCTATTCAATTACATAACCAGATTTGGTGTTGGTTGCTGGAGTTCTGTTCCTAAACAAGCTGGACTGCAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTATTTAAGGCCTGATTTAAAGAGAGGGATGTTTTCACAGCAAGAGGAGGATCTTATAATCAGTCTTCATGAAGTCCTTGGAAATAGGTGGGCTCAAATAGCAGCTCAGTTACCAGGGAGAACTGATAATGAGATTAAGAATTTCTGGAATTCATGCTTAAAGAAGAAGCTACTGAAGCAAGGGATTGACCCAACTACACACAAGCCTCTCACTGAAGCTCATGTTAAAGAAGAGAATAAAACCATAGAGACAACTCCTATGCAAATTCCATTGTCTCAAGGGCCTTCAGCTACATCACAAGGTTCAGCACTTTTAATAAGTGATTCCAATCACTATGATGTTGGGATAACAGAAGCTTCAAGAGAAATTTTCATGAGTAAACCAGCATTGGACCCTTTATCTTTCTATGATTTCCAAATGGGTGTTGTGCATTCTGGTTATAACTTACCTGTGAGTAATTATCAGACAAGCCTTAAACCATCTGATCAGAGCCAATTTGGACTAAATTCAAGCTATGGATTCTGTTCAATGCCAAGTCTAACCAATTCAGATCATGGGAATGTGTCGGTGAATGAGTTTTCAGACAACAATTCAGCTTCCAAAATAAGTTCCTTGTTCATGAATGATCAGGTGAAAGAAAGTTCTAGCAATAGCTCAAACATGAGCACTATTTATCAAGGAGGAGGAGGAGGAGGGTGTCAAATGAGAAGCATATTGGAAAATGCAGGGTTCTCATGGGAAGGAGAGAACAAGTTAGACCCTTTGTTTCAGTTCCAAGTCAATGCCATAAAATCTGAGGATTTCAGGACAAGTTCATGGGAAGAAGGGCAGCTACAGAATCACAATTCAATAGATTTCACTAGCTATCCGTTAACATCACTGTCAGAGGATCTAACTGGAGCAAATTTTGATGTATTCCAGCATATATGA 1107 0.3939 MGRHSCCVKQKLRKGLWSPEEDEKLFNYITRFGVGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGMFSQQEEDLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSCLKKKLLKQGIDPTTHKPLTEAHVKEENKTIETTPMQIPLSQGPSATSQGSALLISDSNHYDVGITEASREIFMSKPALDPLSFYDFQMGVVHSGYNLPVSNYQTSLKPSDQSQFGLNSSYGFCSMPSLTNSDHGNVSVNEFSDNNSASKISSLFMNDQVKESSSNSSNMSTIYQGGGGGGCQMRSILENAGFSWEGENKLDPLFQFQVNAIKSEDFRTSSWEEGQLQNHNSIDFTSYPLTSLSEDLTGANFDVFQHI. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01600 368 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca11g01600 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca11g01600 368 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca11g01600 368 CDD SANT 70 109 IPR001005 -
Seca11g01600 368 FunFam Myb transcription factor 11 67 - -
Seca11g01600 368 FunFam Transcription factor MYB86 69 137 - -
Seca11g01600 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca11g01600 368 CDD SANT 17 61 IPR001005 -
Seca11g01600 368 PANTHER MYB DOMAIN PROTEIN 55 1 299 - -
Seca11g01600 368 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca11g01600 368 SMART sant 66 114 IPR001005 -
Seca11g01600 368 SMART sant 13 63 IPR001005 -
Seca11g01600 368 Gene3D - 69 143 - -
Seca11g01600 368 Gene3D - 11 67 - -
Seca11g01600 368 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca11g01600 368 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01600 Seca-Chr11 18145150 18146737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01600 1 140 MYB Transcription Factor Family AT4G01680 82.143 3.33e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g01600 Myb_DNA-binding 2.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01600 K09422 - gmx:100811140 644.425