Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01591 ATGGCATCATCCAGCTCTTACAATTCTCCTTGTGCTGCCTGCAAATTCTTGAGGAGAAAATGCATGCCAGGATGCATTTTTGCACCTTACTTCCCACCTGAAGAGCCTCAAAAATTTGCAAACGTCCACAAAATATTTGGTGCTAGCAATGTGACTAAGCTCCTCAATGAACTCCTTCCTCACCAGAGAGAAGATGCAGTGAACTCCCTTGCTTATGAAGCAGAAGCAAGAGTGAGAGACCCAGTTTATGGCTGTGTAGGTGCCATCTCTTTCCTCCAGAGACAAGTTCAAAGGCTTCAAAAGGAACTTGATGCTGCTAATGCTGATCTTCTCCGCTATTCCTTCAGTGACATCCCTCCACCTAATTCTCTTTCATTTCCACCACTAGCAATGTCTTCACTTCAACAAATCCCTCAAAGGCAGTTTCAGTTTAGTACTGCAAGAATTGTTGGTAATGAAGGAAGTGGGTTTTATAGGCAATCTCCTACCACTACTTATTCTTTTCCTTATTCTCTTCCATGGACTGATACTTCCTCAGAGGACATCAGTGAGGTTGGAGGTGGTGGTGGAGGAGGAGGAAATATATAA 588 0.4354 MASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLLRYSFSDIPPPNSLSFPPLAMSSLQQIPQRQFQFSTARIVGNEGSGFYRQSPTTTYSFPYSLPWTDTSSEDISEVGGGGGGGGNI. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01591 195 Coils Coil 89 109 - -
Seca11g01591 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 133 - -
Seca11g01591 195 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Seca11g01591 195 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01591 Seca-Chr11 18003996 18006427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01591 1 116 AS2 family AT5G63090 93.162 3.55e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca11g01591 LOB 3.2e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01591 - - gmx:100803667 308.916