Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01581 ATGCCTGTAAATCCATGGACCCTCTTCTTCTTATGCATTTCCCTTTTCCTTCCATACCATTCTTTTATAGCTCTTGCAGTAAACCAACAAGGGGAGGCTCTTCTTTCATGGAAGAGAACCCTGAATGGATCAGTGGAGGTATTGAGTAACTGGGACCCAGTTGATGATACACCATGTAGCTGGTTTGGAGTCAGTTGCAACTTGAAGAATGAAGTAGTACAATTAGATCTGAGGTATGTGGATTTACTTGGAGGACTTCCCACTAATTTCACCTCATTGCTTTCCTTGAATAGTCTCATCTTAACTGGAACCAACCTCACCGGTTCAATCCCAAAAGAAATAGGCAACCTTGGTGAACTCAGCTACTTAGACTTGAGTGACAATGCCTTGAGTGGTGAAATCCCAAGTGAGCTCTGCTACTTGCCTAAACTACAGGAACTTCATCTGAACTCCAACGACCTTGTGGGGTCAATTCCAGTTGCAATTGGGAACCTCACAAAGTTGGAGAAGCTGACTTTATATGACAATCAACTCAGTGGTGAAATTCCCAGTACCATAGGCAACCTGGGGAGCCTACAAGTGATAAGAGCAGGAGGTAACAAGAATCTTGAAGGCCCTTTGCCACAGGAAATTGGCAACTGTTCCAATTTGGTCATGTTGGGCCTTGCTGAAACAAGCATCTCAGGTTTTTTACCACCAACACTTGGCCTCCTGAAGAAGCTTGAAACCATTGCCATTTACACTTCCCTTCTCTCAGGACAAATACCCCCTGAACTCGGTGACTGCACAGAGCTACAAAACATCTACCTTTATGAGAATTCCCTCACTGGATCCATTCCAAGCAAATTGGGCAACCTTATAAACCTCCAAAATCTTCTTCTGTGGCAGAACAATTTAGTTGGCACCATCCCTCCAGAGATTGGAAACTGCTACCAGTTATTAGTGATTGACGTGTCAATGAATTCAATAACAGGAAGCATTCCCAAAAGTTTTGGGAACTTGACTTCTCTGCAAGAACTCCAACTCAGTGTGAACCAAATTTCAGGGGAGATTCCAGGAGAACTTGGAAATTGTCAGCAACTCACTCATGTGGAGCTGGACAACAACCTAATAACAGGCACAATACCCTCCGAATTGGGAAACCTTGGGAATCTAACGTTGTTGTTCCTATGGCACAACAAGCTACAAGGTAACATACCCTCGTCCCTTTCCAATTGTCAAACCCTTGAGGCTATTGATCTATCACAGAATCAGTTGACGGGTCCCATACCAAAGGGGATATTCGAGCTCAAGAATCTCAACAAGCTTTTGTTGCTCTCTAACAATCTCTCTGGTAAAATCCCCTCTCAAATTGGGAATTGTTCCTCTCTTATTCGCTTCAGAGCAAACGACAACAATATTACAGGGAGCATCCCTTCACAGATTGGGAATCTCAAGAATTTGAATTTCTTGGACCTAGGGAACAATCGGATTTCCGGAGTTATCCCTGAGGAAATCTCCGGCAGCCGGAATCTCACCTTTTTGGACTTGCATTCCAACTTCATCGCCGGAAACTTGCCGGAAAGTCTGAGCCAGCTCGTCTCTCTTCAATTTCTCGATGTCTCCGATAACATGATCGAAGGCACACTGAGCTCTACCCTCGGTTCACTCTCTGCTCTCACCAAACTGGTTCTCCGAAAGAATCGAATCTCCGGGTCAATTCCGAGTCGACTCGGTTCATGTTCCAAGCTGCAGTTGCTGGACCTCAGCAGCAACAGTCTCTCCGGCGAAATTCCCGGCAGCATCGGGAACATTCCGGCGCTGGAAATTGCTCTGAATCTGAGCATCAACCAACTCTCCGGCGAGATTCCCCGTGAGTTTTCAGGTCTGACGAAGCTCGGAGTCTTGGACATATCTCACAACGTTCTCACCGGGAACCTTCAGTATCTCGCCGACCTTCAAAATCTCGTGGTCCTCAATATCTCCTACAACAAATTCTCCGGGCGCGTTCCAGACACGCCATTCTTCGCGAAGCTTCCATTAAGCGTGCTCGCGGGAAACCCCTCGCTGTGCTTCTCCGGCAACCAATGCGACGGCGCCGAAGGCGCCGGGAAATCATCTCGGCGGAGGAGGGAGGCGCGCGTGGCAATGGTGGTCCTGCTATGCGTCGCGTGCGTGCTCCTCATGGCGGCGCTTTACGTCGTCGTTTCAGGTAAACGACGAGGGGACCAAGAAAACGACGCGGACCTCGATGGAAAAGACAGCGACGTTGACATGGCCCCACCTTGGGAGGTGACACTGTACCAGAAGCTCGACCTGTCAATCTCTGACGTAGCGAAATGCCTCTCTGCTGGCAACGTCATCGGCCACGGTCGATCCGGCGTCGTTTACAGGGTCAACATGCCTGCCACCGGATTGACCATCGCGGTGAAAAAATTCAGGTCATCGGAGAAATTCTCGGCATCGTCGTTTTCGTCGGAAATTGCCACACTGGCAAGAATCCGGCACCGGAATATCGTGCGCCTGTTAGGCTGGGGTGCCAACAGGAGAACAAAGTTACTGTTCTATGATTATTTACCTAACGGTAATTTGCATTCCCTGTTACACGAGGGGTGCACAGGATTAATGGAGTGGGAGACGCGGCTCAAGATAGCACTAGGCGTGGCTGAGGGTTTAGCTTACTTACACCACGATTGCGTCCCTGCTATCTTGCACCGGGACGTGAAGGCGCAAAACATTTTGTTAGGAGACACATATGAGGCTTGTTTGGCTGATTTTGGATTCGCTCGCTTCGTGGAAGAAGATCACGCTTCGTTTTCCCTTAATCCACAGTTTGCGGGTTCTTACGGCTACATTGCTCCTGAGTATGCTTGTATGCTTAAAATCACGGAGAAGAGTGATGTATACAGCTTTGGGGTGGTCCTACTAGAGATAATAACGGGGAAAATGCCGGTGGATCCATCATTCCCGGAAGGACAACATGTAATTCAATGGGTGAGGGAGCATTTGAAGAGCAAGAAGGACCCAATTGAGGTTCTGGATTCCAAGCTTCAAGGCCATCCAGACACTCAAATACAAGAGATGTTACAAGCACTTGGTATCTCTCTCTTGTGTACAAGTAATCGTGCAGAGGATCGACCGACAATGAAAGATGTCGCTGCATTATTAAGGGAAATTCGACACGATACTCCTGCAGGTGCTGAGCCCCACAAGCCTAAAAGAACTACTGAAGCTTCGTCCTATTCATCGTCCTCTGTTACCCCTGCTCAGTTGTTGCTCCTTCAATCCAATTCACATTCCTCATCACTTGCTTATTCCTCTTCCTCACTAGCAGCCTACCACTCACCAAGGAACCAATCATGA 3342 0.4797 MPVNPWTLFFLCISLFLPYHSFIALAVNQQGEALLSWKRTLNGSVEVLSNWDPVDDTPCSWFGVSCNLKNEVVQLDLRYVDLLGGLPTNFTSLLSLNSLILTGTNLTGSIPKEIGNLGELSYLDLSDNALSGEIPSELCYLPKLQELHLNSNDLVGSIPVAIGNLTKLEKLTLYDNQLSGEIPSTIGNLGSLQVIRAGGNKNLEGPLPQEIGNCSNLVMLGLAETSISGFLPPTLGLLKKLETIAIYTSLLSGQIPPELGDCTELQNIYLYENSLTGSIPSKLGNLINLQNLLLWQNNLVGTIPPEIGNCYQLLVIDVSMNSITGSIPKSFGNLTSLQELQLSVNQISGEIPGELGNCQQLTHVELDNNLITGTIPSELGNLGNLTLLFLWHNKLQGNIPSSLSNCQTLEAIDLSQNQLTGPIPKGIFELKNLNKLLLLSNNLSGKIPSQIGNCSSLIRFRANDNNITGSIPSQIGNLKNLNFLDLGNNRISGVIPEEISGSRNLTFLDLHSNFIAGNLPESLSQLVSLQFLDVSDNMIEGTLSSTLGSLSALTKLVLRKNRISGSIPSRLGSCSKLQLLDLSSNSLSGEIPGSIGNIPALEIALNLSINQLSGEIPREFSGLTKLGVLDISHNVLTGNLQYLADLQNLVVLNISYNKFSGRVPDTPFFAKLPLSVLAGNPSLCFSGNQCDGAEGAGKSSRRRREARVAMVVLLCVACVLLMAALYVVVSGKRRGDQENDADLDGKDSDVDMAPPWEVTLYQKLDLSISDVAKCLSAGNVIGHGRSGVVYRVNMPATGLTIAVKKFRSSEKFSASSFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLHSLLHEGCTGLMEWETRLKIALGVAEGLAYLHHDCVPAILHRDVKAQNILLGDTYEACLADFGFARFVEEDHASFSLNPQFAGSYGYIAPEYACMLKITEKSDVYSFGVVLLEIITGKMPVDPSFPEGQHVIQWVREHLKSKKDPIEVLDSKLQGHPDTQIQEMLQALGISLLCTSNRAEDRPTMKDVAALLREIRHDTPAGAEPHKPKRTTEASSYSSSSVTPAQLLLLQSNSHSSSLAYSSSSLAAYHSPRNQS. 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01581 1113 Gene3D Transferase(Phosphotransferase) domain 1 852 1072 - -
Seca11g01581 1113 ProSiteProfiles Protein kinase domain profile. 775 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01581 1113 SMART LRR_sd22_2 526 552 - -
Seca11g01581 1113 SMART LRR_sd22_2 382 408 - -
Seca11g01581 1113 SMART LRR_sd22_2 165 191 - -
Seca11g01581 1113 SMART LRR_sd22_2 478 501 - -
Seca11g01581 1113 SMART LRR_sd22_2 117 143 - -
Seca11g01581 1113 SMART LRR_sd22_2 574 600 - -
Seca11g01581 1113 SMART LRR_sd22_2 623 648 - -
Seca11g01581 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 852 1067 - -
Seca11g01581 1113 SUPERFAMILY Protein kinase-like (PK-like) 764 1050 IPR011009 -
Seca11g01581 1113 MobiDBLite consensus disorder prediction 1054 1076 - -
Seca11g01581 1113 ProSitePatterns Protein kinases ATP-binding region signature. 781 805 IPR017441 GO:0005524
Seca11g01581 1113 Gene3D Ribonuclease Inhibitor 239 313 IPR032675 -
Seca11g01581 1113 Gene3D Ribonuclease Inhibitor 29 138 IPR032675 -
Seca11g01581 1113 Pfam Leucine rich repeat 288 347 IPR001611 GO:0005515
Seca11g01581 1113 Pfam Leucine rich repeat 463 513 IPR001611 GO:0005515
Seca11g01581 1113 Gene3D Phosphorylase Kinase; domain 1 756 851 - -
Seca11g01581 1113 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
Seca11g01581 1113 Gene3D Ribonuclease Inhibitor 316 425 IPR032675 -
Seca11g01581 1113 SMART LRR_typ_2 550 574 IPR003591 -
Seca11g01581 1113 SMART LRR_typ_2 286 310 IPR003591 -
Seca11g01581 1113 SMART LRR_typ_2 382 406 IPR003591 -
Seca11g01581 1113 SMART LRR_typ_2 430 454 IPR003591 -
Seca11g01581 1113 SMART LRR_typ_2 334 358 IPR003591 -
Seca11g01581 1113 SMART LRR_typ_2 117 141 IPR003591 -
Seca11g01581 1113 SMART LRR_typ_2 478 502 IPR003591 -
Seca11g01581 1113 SMART LRR_typ_2 526 549 IPR003591 -
Seca11g01581 1113 SMART LRR_typ_2 165 189 IPR003591 -
Seca11g01581 1113 SUPERFAMILY L domain-like 27 280 - -
Seca11g01581 1113 FunFam Putative LRR receptor-like serine/threonine-protein kinase At4g26540 family 520 603 - -
Seca11g01581 1113 SMART serkin_6 775 1049 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01581 1113 SUPERFAMILY RNI-like 267 640 - -
Seca11g01581 1113 Gene3D Ribonuclease Inhibitor 426 694 IPR032675 -
Seca11g01581 1113 MobiDBLite consensus disorder prediction 1054 1068 - -
Seca11g01581 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 27 200 - -
Seca11g01581 1113 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Seca11g01581 1113 FunFam Putative LRR receptor-like serine/threonine-protein kinase 604 689 - -
Seca11g01581 1113 FunFam LRR receptor-like serine/threonine-protein kinase 764 851 - -
Seca11g01581 1113 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 432 1050 - -
Seca11g01581 1113 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 201 424 - -
Seca11g01581 1113 Pfam Protein kinase domain 778 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01581 1113 Gene3D Ribonuclease Inhibitor 139 233 IPR032675 -
Seca11g01581 1113 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 425 519 - -
Seca11g01581 1113 Pfam Leucine Rich Repeat 576 597 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01581 Seca-Chr11 17838920 17844108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01581 25 1103 Receptor kinase-like Gene Family AT5G56040 55.239 0.0 1143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca11g01581 Pkinase 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01581 - - gmx:100778064 1818.13