LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g01566	ATGCAGATTTTCAACATTGTTCCTGAAAACCTTATAATCAGGGCAATCCTGATATCTGCATTGTTGTCATGTGTCGCATCCTCATCCTCTGACGCTGGGATAAACGAAGCTGGTCTCACGTGCGGGTCTTATAGGTACCCTGGTGAAGGTGCAGGGAAGTTGATGCAAAACTTCATGGCTCTAATGGACGCCGTGTCGTTTCAGGTCAAAGAAAGAGGTTGGGGAGCACAGACATTGCTTGGTTATTGGCCTCCAATGTACGCGTTAGGCCAATGCAACCATGATCTCAATCCCACACAATGCTACTCATGCTTCACACAAGCGAGACAATTGCTATCAAGGTGCATACCAAAGGTAGCTGGTAGAATTTACATTGATGGCTGTTTCCTTCGTTATGATAATTATACTTTCTTCACCGAAAGCGTGGACCCTAATCACGACACAAACGTGTGCGACTCGCCGCCGCCGACGCAGCCTTTGGAGTCCAAAGTGGCTGCGTCGGTGATCTTGAACGTGACAAAGAGCGCGGGGGAACACAAGTTCGCGGTGGATGGGGAAGGAGGTGTTTTTGCGTTGGCGCAATGCTGGGAGACGTTAGATAAAGAGAACTGCCAGAGATGCTTGAGAGAAGCAGAGGGAAAATTGCAGGGGTGTGTGCCTGGTGCTGGGGGTAGGAGTTTATTTACTGGTTGTGTTTTGAGGTATTCAACAAGGAAATTCTACAACGACGTTATTGTACCCAATGAGATAAAGGATCAACCACAACCAGTTCCAGAAAGACGTAGTGTCTGGAAGATCGTTGCATGTGCAATATCGGCAGTTGCAGTGGTTTTACTTATTGTCATTGCTGCACTTCTATGCTGGAGGAAAAAAGCATCGCGTGGAAAAGGAAGCAACGATTTTGGTGCGTCACCTAGTTTAGCCTACATGTCTGGTTTCAGTTATAGGTACGATTTGCTTGAGAAGGCCACGAATTATTTTGATCCCGCAAACCAATTAGGCCAGGGAGGAGCAGGAGCTGGTTCTGTGTTCAAAGGAACACTCCCTTCAGGGACGAACGTTGCTGTTAAACGACTGTTTTTTAATTCACGACAATGGACAGATGGGTTCTTCAACAAAGTCAATTCGATTAATGGGATTCAACACAAAAATGTGGTGAAACTTTTGGGGTGCAGCATTGAAGGGCCTGAAACCCTGTTGGTTTATGAATATGTGCCCAATAAAAGTCTTGATCAAATCCTTTTTGGTAAGGACTCGGAAAATGTTCTGACCTGGGAGAAACGGTTTCAAATCATATGTGGGATAGCTGAAGGCTTAGCATACCTTCATGGAGGCTCTGGAACAAAGATTATCCATAGAGACATAAAGGCCAGCAACATTGTGCTTGATGGGAATCTTAATCCAAAAATTGCTGATTTTGGTCTTGCTCGTTCTGTTGCTGAAAATAAATCTCATCCTAACAATGGAATTGTCGGGACATTGGGATATATGGCTCCTGAGTATCTCACCCAAGGACAACTGACAGAAAAGGCAGATGTCTATGCTTTTGGTGTGATGGTTATTGAAATTGTCTGTGGCAAGAAGAACAGTGTTTACACACAAGGGTCAACTTCAGTACTCCACTCTGTCTGGAAGAATTACAAGGCAAACAATATCACAGCATTTGTTGATCCATCTCTGGATGGCAAATTTGTGGCAGAAGAGGCATCAAATGCACTCCAAGCTGGCCTTCTTTGTACACAATCTTCAGTTACTCTTAGACCATCCATGTCTGAAGTGGTTCAAATGCTAACCAAGAAAGACTACATTATTCCCTCCCCAAAGCAACGGCCATTCCTCAATTCTAATGTGCCAAGTCTTGAAAAACGGACCTTGACTTCCACCCTGAGTGCTATGTCATCACATGGGCCTCCAAGTGCAAGATCCTCTTTCCACAGCACCACCAGTTCCTTAATCCTACACGAGGAATCGACTCTACTAGAGAATTCCTATTCTTCTTCTCCTCGGTTTACAACTACGTGGAGCCCTGATTCAAATATCCAAGCAAATATTAGGGCACCTGAACCGAGATAG	2073	0.4491	MQIFNIVPENLIIRAILISALLSCVASSSSDAGINEAGLTCGSYRYPGEGAGKLMQNFMALMDAVSFQVKERGWGAQTLLGYWPPMYALGQCNHDLNPTQCYSCFTQARQLLSRCIPKVAGRIYIDGCFLRYDNYTFFTESVDPNHDTNVCDSPPPTQPLESKVAASVILNVTKSAGEHKFAVDGEGGVFALAQCWETLDKENCQRCLREAEGKLQGCVPGAGGRSLFTGCVLRYSTRKFYNDVIVPNEIKDQPQPVPERRSVWKIVACAISAVAVVLLIVIAALLCWRKKASRGKGSNDFGASPSLAYMSGFSYRYDLLEKATNYFDPANQLGQGGAGAGSVFKGTLPSGTNVAVKRLFFNSRQWTDGFFNKVNSINGIQHKNVVKLLGCSIEGPETLLVYEYVPNKSLDQILFGKDSENVLTWEKRFQIICGIAEGLAYLHGGSGTKIIHRDIKASNIVLDGNLNPKIADFGLARSVAENKSHPNNGIVGTLGYMAPEYLTQGQLTEKADVYAFGVMVIEIVCGKKNSVYTQGSTSVLHSVWKNYKANNITAFVDPSLDGKFVAEEASNALQAGLLCTQSSVTLRPSMSEVVQMLTKKDYIIPSPKQRPFLNSNVPSLEKRTLTSTLSAMSSHGPPSARSSFHSTTSSLILHEESTLLENSYSSSPRFTTTWSPDSNIQANIRAPEPR.	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g01566	690	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	450	462	IPR008271	GO:0004672\|GO:0006468
	Seca11g01566	690	ProSiteProfiles	Gnk2-homologous domain profile.	34	137	IPR002902	-
	Seca11g01566	690	Pfam	Salt stress response/antifungal	77	135	IPR002902	-
	Seca11g01566	690	Pfam	Salt stress response/antifungal	178	237	IPR002902	-
	Seca11g01566	690	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	86	627	-	-
	Seca11g01566	690	SMART	serkin_6	327	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g01566	690	Gene3D	-	41	137	IPR038408	-
	Seca11g01566	690	Gene3D	-	153	240	IPR038408	-
	Seca11g01566	690	FunFam	Putative DUF26-domain receptor-like protein kinase family protein	304	404	-	-
	Seca11g01566	690	CDD	STKc_IRAK	342	599	-	-
	Seca11g01566	690	ProSiteProfiles	Gnk2-homologous domain profile.	139	240	IPR002902	-
	Seca11g01566	690	Gene3D	Transferase(Phosphotransferase) domain 1	405	608	-	-
	Seca11g01566	690	SUPERFAMILY	Protein kinase-like (PK-like)	313	622	IPR011009	-
	Seca11g01566	690	Pfam	Protein kinase domain	330	595	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g01566	690	FunFam	Cysteine-rich receptor-like protein kinase 2	405	605	-	-
	Seca11g01566	690	ProSiteProfiles	Protein kinase domain profile.	327	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca11g01566	690	MobiDBLite	consensus disorder prediction	665	690	-	-
	Seca11g01566	690	Gene3D	Phosphorylase Kinase; domain 1	307	404	-	-
	Seca11g01566	690	MobiDBLite	consensus disorder prediction	665	682	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g01566	Seca-Chr11	17630428	17634083	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g01566	17	645	Receptor kinase-like Gene Family	AT1G70520	41.113	1.36e-152	455

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Seca11g01566		Pkinase	1.2e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g01566	-		-	gmx:100780384	840.876