Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01557 ATGGAGAAGGGTGATAATGAAGTTGATTCAACTGCACCATCAGAAGCTTTCAATAATTCAGTGAATACATCAGAGGAATGGATTCCTATGTGTGGTGAAGAATTGAAACCCATAATTGGCATGATCTTTGATACTTATGGAGAAAACTTTTATAAAAGGTATGCACATGTTGCTGGTTTTAGTGTACGCAAATCATCTGAAACAAAAGATAAAAATGGCGTGAAGTGGAAGTATTTTCTTTGTTCAAAACAAGGTTTCGAAGTTGAGAAAAATAAGGCCATAGTTGAGTTGCTTGTTGATGAAAAAATTGCTTAA 315 0.3429 MEKGDNEVDSTAPSEAFNNSVNTSEEWIPMCGEELKPIIGMIFDTYGENFYKRYAHVAGFSVRKSSETKDKNGVKWKYFLCSKQGFEVEKNKAIVELLVDEKIA. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01557 104 Pfam FAR1 DNA-binding domain 49 93 IPR004330 -
Seca11g01557 104 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 15 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01557 Seca-Chr11 17483780 17484094 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g01557 FAR1 1.2e-08 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01557 - - mtr:120577464 129.798