Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01556 ATGGCCCTTGAAACAAATTTCAAAGAAAACTATGTCTCACAGACAATGCATTTGCAAGAAAACTACTTGAATCCCAGCATGAAAGATGAGCTTCCTTTTGGGGCTCCTTCCTCACAGGGTTTCTTGCAAGATTTTCACCATATTGACCAATTTCATGTGAATGCCTCCTCATCCAACAATCCAGTTTTTGGGGTCCAAACTCCAAATTTTGATCCTTTTAATAATACAACCAGTGAGTGTGCACCCACAGATTTTGAAGCTTATGAGGGCAAGCCTTTTGCTGAGAGCAATGGTAGTGGACATGCTCACATTATGGACAATTTCCAATATGAAGGTTATAGTTTGAACCTCCCTGGGAGGAATCAACTGGATATGATGGTTGCAAACCAAAGTTATATGCCCTTTAATCCTCTAGAAACCAAGCCTTTGAATTTTGTTGTACCGGATGAAGTCTCATGCATATCCCCAGCAAATTATTATAAAAGAGTTGACATGAATAAAAACAACAGGGAATCTCCAAACACTAGAAGAACATATAAAGCTAGAAAGAAGTCCAACATAGTGAAGGGGCAATGGACAGTGGATGAAGATAGATTGTTGATTCAACTGGTTGAACAATATGGAGTAAGGAAGTGGTCTAATATTGCTCAAAAGTTGCCTGGGAGAATAGGGAAACAATGCAGAGAACGGTGGCATAATCATTTAAGGCCTGACATTAAGAAGGACATATGGACTGATGAAGAGGATAAGATACTGATCCAAGCTCATGCAGAGATAGGGAATAAGTGGGCAGAGATTGCAAAAAGATTGCCAGGAAGAACAGAGAACTCAATTAAAAACCATTGGAATGCAACCAAGAGAAGGCAATATTCAAAAAGAAAATGTCGCTCTAAGTACCCTAGAGGCTCTCTTCTGCAGGACTATATCAAAAGCTTGAACTTGGACCAAAACCCACCAAGAGACTTTCGAAAAAAATCATCTTCTGCTAATTATAATACTAATGCCAAGACAAACAATACTAGCACAAGCAAAACAGCACCACCTCAGCCCCAGAGTGCAGATCAATTTTGTTCCAATGACCGCATGGTGCCAACAAACTTTGACTTCAATGAGGTCCCAGATTTTTGCTTGGATGATAATTTGTTTGAAGAGGGGTGTGGTATAGATTCTTTGCTAGATGATTTTCCAAGTGTTCCTACGATGAATGAGAAAGATTTTGATGGAAAAATGCTAACTATGGAGGGAAAGCAAATTGATAAGGGAAAAGGAGCCATGCAAGTTGTGAATCTTGATGAGCATCACTTTGAGGCAGAGGAGATGATGGCATCCACTGTGGGGATTGAAGTTAAGAAGGAGATGGATTTGGTGGAGATGATGTGTCATGTTAATGGAAGTATTGATGTCTAA 1407 0.3973 MALETNFKENYVSQTMHLQENYLNPSMKDELPFGAPSSQGFLQDFHHIDQFHVNASSSNNPVFGVQTPNFDPFNNTTSECAPTDFEAYEGKPFAESNGSGHAHIMDNFQYEGYSLNLPGRNQLDMMVANQSYMPFNPLETKPLNFVVPDEVSCISPANYYKRVDMNKNNRESPNTRRTYKARKKSNIVKGQWTVDEDRLLIQLVEQYGVRKWSNIAQKLPGRIGKQCRERWHNHLRPDIKKDIWTDEEDKILIQAHAEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQYSKRKCRSKYPRGSLLQDYIKSLNLDQNPPRDFRKKSSSANYNTNAKTNNTSTSKTAPPQPQSADQFCSNDRMVPTNFDFNEVPDFCLDDNLFEEGCGIDSLLDDFPSVPTMNEKDFDGKMLTMEGKQIDKGKGAMQVVNLDEHHFEAEEMMASTVGIEVKKEMDLVEMMCHVNGSIDV. 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01556 468 CDD SANT 244 286 IPR001005 -
Seca11g01556 468 PANTHER MYB PROTEIN-RELATED 189 344 - -
Seca11g01556 468 MobiDBLite consensus disorder prediction 323 354 - -
Seca11g01556 468 MobiDBLite consensus disorder prediction 314 354 - -
Seca11g01556 468 ProSiteProfiles Myb-like domain profile. 236 286 IPR001005 -
Seca11g01556 468 MobiDBLite consensus disorder prediction 277 298 - -
Seca11g01556 468 SUPERFAMILY Homeodomain-like 186 282 IPR009057 -
Seca11g01556 468 Gene3D - 242 303 - -
Seca11g01556 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 239 IPR017930 -
Seca11g01556 468 FunFam Transcription factor MYB119 242 306 - -
Seca11g01556 468 CDD SANT 192 235 IPR001005 -
Seca11g01556 468 Gene3D - 188 241 - -
Seca11g01556 468 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 240 290 IPR017930 -
Seca11g01556 468 FunFam Transcriptional activator Myb isoform A 188 241 - -
Seca11g01556 468 SMART sant 240 288 IPR001005 -
Seca11g01556 468 SMART sant 188 237 IPR001005 -
Seca11g01556 468 ProSiteProfiles Myb-like domain profile. 184 235 IPR001005 -
Seca11g01556 468 Pfam Myb-like DNA-binding domain 189 235 IPR001005 -
Seca11g01556 468 Pfam Myb-like DNA-binding domain 244 283 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01556 Seca-Chr11 17470229 17472121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01556 61 396 MYB Transcription Factor Family AT4G18770 48.229 1.57e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g01556 Myb_DNA-binding 4.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01556 K09422 - gmx:100816653 701.819