Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01539 ATGAAAAGGCTACAATTGAAGGACTCCCAACAACTGAGAAAGAAATTAAAGAATCAGATTTGGTGTTTAAGTTTTGGATTCTACCTATTTTCTCAGCCACCACAAATAATCATAAAAAACATCCTTAAGGATCCACTAGCACAGTTTCCAGAGCATTGTTGGTGTTCCATTCAAGACCATATGCATAAGCCAACTTCAGGTCCTCCAGTTAGTTTTGGTCGTTCCGGAGCATCCAACCTCACCAACTTGTACTTCATTGGATATTGTTTTATACAAGGTATAGCGATGGAAGGTGGGCATGAATATAAGAAGGGATTCTGGAATGTAGAGGAAGACATGATTCTAATGGATTACATAAAGGAGAATGGAACAGGGAAGTGGAATCGTATAACTAAAGCTACAGGTTTGAAGAGAAGTGGTAAAAGTTGCAGGCTGAGGTGGATGAATTATCTGAGTCCTGGTGTCAAGCATGGGGACTTCTCAAATCAAGAAGAAGACTTAATCATTCGCCTCCACAAGCTCCTTGGAAATAGGTGGTCTTTGATTGCAGGGAGGATTCCAGGGAGAACTGACAACCAAGTGAAGAATTATTGGAACACTCATTTAAGCAAAAAGCTTGGTGTTATGAAGGAAAAGAGGTCTCCAAAGACTGTCCTTAATGAACAAAAGGATGATAATTGCAATAGCACATCAGAGTCCATTGATGAAGGTGAAAAGCTTGTCCAAAAAAGCTCCTTTAATGGTGATCTCAACTTGGCAAGCACTCACAAAGGAATTGTTACAGATGATTTTGGGAGCGTCTTCCGTTTTGCTAATAATGAGCTCAATCTATATTCTCCTTACTTTATGGAGTCTTTTCAAGAATGTTTTCTTGACCTTTGA 882 0.3934 MKRLQLKDSQQLRKKLKNQIWCLSFGFYLFSQPPQIIIKNILKDPLAQFPEHCWCSIQDHMHKPTSGPPVSFGRSGASNLTNLYFIGYCFIQGIAMEGGHEYKKGFWNVEEDMILMDYIKENGTGKWNRITKATGLKRSGKSCRLRWMNYLSPGVKHGDFSNQEEDLIIRLHKLLGNRWSLIAGRIPGRTDNQVKNYWNTHLSKKLGVMKEKRSPKTVLNEQKDDNCNSTSESIDEGEKLVQKSSFNGDLNLASTHKGIVTDDFGSVFRFANNELNLYSPYFMESFQECFLDL. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01539 293 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 101 233 - -
Seca11g01539 293 CDD SANT 107 151 IPR001005 -
Seca11g01539 293 CDD SANT 160 202 IPR001005 -
Seca11g01539 293 FunFam MYB-related transcription factor 103 156 - -
Seca11g01539 293 SUPERFAMILY Homeodomain-like 102 198 IPR009057 -
Seca11g01539 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 152 206 IPR017930 -
Seca11g01539 293 ProSiteProfiles Myb-like domain profile. 99 151 IPR001005 -
Seca11g01539 293 Gene3D - 158 233 - -
Seca11g01539 293 Pfam Myb-like DNA-binding domain 105 151 IPR001005 -
Seca11g01539 293 Pfam Myb-like DNA-binding domain 158 202 IPR001005 -
Seca11g01539 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 151 IPR017930 -
Seca11g01539 293 Gene3D - 104 156 - -
Seca11g01539 293 SMART sant 103 153 IPR001005 -
Seca11g01539 293 SMART sant 156 204 IPR001005 -
Seca11g01539 293 ProSiteProfiles Myb-like domain profile. 152 202 IPR001005 -
Seca11g01539 293 FunFam Transcription factor WER 158 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01539 Seca-Chr11 17266638 17270821 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01539 100 208 MYB Transcription Factor Family AT5G40330 80.734 2.91e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g01539 Myb_DNA-binding 6.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01539 K09422 - zju:107418407 230.335