Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01537 ATGATGAAGAACTTGTACTTGTTTAAAGAAATTTCTCAAAATGTGAGGTCAGGGAGAAGGCTCTCTCTAGGGGAATACAAGAGAGCAATTTCATGGTCTAAGTATTTGGTATCCTCTGGAGCAGCTATAAAGGGAGAAGCTGAAGAGGATTGGAGTGCAGATTTGTCTCAGTTGTTCATTGGTTCCAAATTTGCTTCTGGCAGACATAGCAGAATCTACAGAGGAATCTACAAGCACATGGATGTGGCAATTAAGCTGGTGAGTCAACCAGAGGAGGATGAGGATTTGGCTGTTTTGCTTGAGAAGCAATTTACTTCTGAGGTTGCTTTGCTGTTTCGGTTGCGCCATCCAAATATCATCACTTTTGTTGCAGCTTGCAAGAAACCTCCTGTCTTTTGTATAATTACTGAATATTTGGCTGGGGGCTCTTTGAGAAAATACCTGCATCAACAAGGACCACATTCAGTTCCTCTAAAACTTGTTCTCAAATTAGCCTTGGATATTGCAAGGGGGATGCAATATCTTCATTCTCAGGGTGTACTTCATAGGGATCTCAAATCAGAAAATCTTCTGTTAGGTGAAGATATGTGTGTAAAAGTGGCAGATTTTGGGATCTCATGCTTAGAATCCCAAACTGGCAGTGCTAAAGGATTTACTGGAACTTACCGTTGGATGGCACCTGAAATGATCAGAGAAAAGAATCATACCAAGAAAGTAGATGTCTATAGTTTTGCTATAGTTCTATGGGAGCTTCTAACAGGACTCACACCATTTGAGAACATGACACCAGAGCAGGCAGCATATGCAGTGACTCACAAGGTATTGACTTTGCCTCCTAATTTACTTAATATTCTTGTTGTGAATAATGCAAGGCCTCAGCTACCATCTGACTGTCCATGGGCATTTAGTCATCTAATCAACAGATGCTGGTCAGGCAATCCAAATAAACGGCCACATTTTGATGAGATAGTCTCAATCTTAGAGAGCTATACTGAATCACTTGAGCAGGATCCAGAATTTTTCTCTACTTACAAACCACGTTCAAGTAACATAATTCAGAGATGCTTACCAAACTGTAATGCTGGCCATAAATCTGCTAGCAATGCTTAG 1110 0.4063 MMKNLYLFKEISQNVRSGRRLSLGEYKRAISWSKYLVSSGAAIKGEAEEDWSADLSQLFIGSKFASGRHSRIYRGIYKHMDVAIKLVSQPEEDEDLAVLLEKQFTSEVALLFRLRHPNIITFVAACKKPPVFCIITEYLAGGSLRKYLHQQGPHSVPLKLVLKLALDIARGMQYLHSQGVLHRDLKSENLLLGEDMCVKVADFGISCLESQTGSAKGFTGTYRWMAPEMIREKNHTKKVDVYSFAIVLWELLTGLTPFENMTPEQAAYAVTHKVLTLPPNLLNILVVNNARPQLPSDCPWAFSHLINRCWSGNPNKRPHFDEIVSILESYTESLEQDPEFFSTYKPRSSNIIQRCLPNCNAGHKSASNA. 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01537 369 SMART serkin_6 58 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01537 369 CDD STKc_MAP3K-like 65 327 - -
Seca11g01537 369 FunFam Serine/threonine-protein kinase isoform 1 48 140 - -
Seca11g01537 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Seca11g01537 369 Gene3D Phosphorylase Kinase; domain 1 47 139 - -
Seca11g01537 369 Pfam Protein tyrosine and serine/threonine kinase 60 327 IPR001245 GO:0004672|GO:0006468
Seca11g01537 369 ProSiteProfiles Protein kinase domain profile. 58 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01537 369 SUPERFAMILY Protein kinase-like (PK-like) 48 328 IPR011009 -
Seca11g01537 369 PRINTS Tyrosine kinase catalytic domain signature 220 230 IPR001245 GO:0004672|GO:0006468
Seca11g01537 369 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672|GO:0006468
Seca11g01537 369 PRINTS Tyrosine kinase catalytic domain signature 174 192 IPR001245 GO:0004672|GO:0006468
Seca11g01537 369 PRINTS Tyrosine kinase catalytic domain signature 136 149 IPR001245 GO:0004672|GO:0006468
Seca11g01537 369 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 52 330 - -
Seca11g01537 369 Gene3D Transferase(Phosphotransferase) domain 1 141 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01537 Seca-Chr11 17163449 17167741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01537 31 336 MAP Kinase Kinase Kinase AT1G62400 60.968 5.64e-132 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca11g01537 PK_Tyr_Ser-Thr 4.3e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01537 - - gmx:100785212 635.18