Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01534 ATGAGAGATTTTGGGCGGCAGCAGAGATATGCTCGTTTCTGTGGAAGAGTAGTTGTCCTTTCAATCCTTGCATTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATAGTTGGTACCCTGTGGTTCAGTAATTCCAAGAACTGCTTACCCGAAGAAGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTACTGTGGACTCCTTTGCATTGCTTGCTTGTCAATGGGGAAGTGGTTGACACGAAGACAAGCACACTTATTGCGAGCCCAACAGGGTATCCCTGTATCTGAATACGGGATTCTGGTTGATATGATCCGAGTGCCTGACTGGGCATTTGAAGCTGCAGGTCAAGAAACAAGAGGCATGGGCCAAGATACCGCTGCATATCATCCAGGACTTTACTTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATCCAGGAACTCCCAAAGTTCAGGTTAAAGGCTGTTCCCACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCTATGTAGGGAATGAGGTCCGCGGCCTACCTTGTGCTCACAATTTTCACGTTGAATGCATTGATGAATGGCTTAGGCTGAATGTGAAATGTCCCCGGTGCCGTTGCTCAGTGTTTCCAAATCTTGATCTTAGTGCTCTGTCCAATCTCCATGCTGATTCTGAACGGTCTTCTGCCAGTGTTGTTACAACAACCAGATATGTGAGAGGCCAACCTTCTAGTCAAAGTTATCGGTTAAGATTACAGGGTCTTCTCCGCCCAGTGCGTGCTGAAATTGCAGGACCAGTTGGTGACACTGATCATGCTTTGGAAAATGCTGAGAACGGTCTTGTACCTGTTGTGACTCGAAATGCATCAACTGGAGACCAGGTCTCTTCTGTTGAATGCATGCCTGTCCGTCTTTCCACTGCACAAAGTTAG 939 0.4675 MRDFGRQQRYARFCGRVVVLSILALLLYPFLWAWTIVGTLWFSNSKNCLPEEGQKWGFLIWLLFSYCGLLCIACLSMGKWLTRRQAHLLRAQQGIPVSEYGILVDMIRVPDWAFEAAGQETRGMGQDTAAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFYVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLHADSERSSASVVTTTRYVRGQPSSQSYRLRLQGLLRPVRAEIAGPVGDTDHALENAENGLVPVVTRNASTGDQVSSVECMPVRLSTAQS. 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01534 312 SMART ring_2 167 207 IPR001841 -
Seca11g01534 312 FunFam E3 ubiquitin-protein ligase SIS3 135 213 - -
Seca11g01534 312 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 213 IPR013083 -
Seca11g01534 312 Pfam Ring finger domain 166 208 IPR001841 -
Seca11g01534 312 SUPERFAMILY RING/U-box 149 216 - -
Seca11g01534 312 ProSiteProfiles Zinc finger RING-type profile. 167 208 IPR001841 -
Seca11g01534 312 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 3 292 IPR044793 GO:0004842|GO:0010182
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01534 Seca-Chr11 17125632 17129122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01534 3 292 C3H Transcription Factor Family AT3G47990 74.403 4.58e-155 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01534 K16284 - gmx:100812016 583.178