Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01528 ATGTGCCCACATGGATGTGAGAAAGAGGAAGAAGAAGATGAAGAACAAGCAACACAACAAAATCAACTGAAACATCCACAACCCAGAAAAAATTCATTTTTTTTCTCTGTTTTTCTTTATTTTTTCACACTCAAGCCTTCATCATCATCATCGTATATATATATAGATAGAGAGAAGGACAGAGAAAGGTTGAAAAATAAGATGAAGGAAAGCAGTGATGGGTTTGTGAGGGCAGATCAGATTGATCTGAAGAGCATAGATGAACAACTGGAGAGACACCTCAACAAGGTGTTGACCATAGAAAAGAAAAAGCGCACAGAAGAAGAAGATGCTGATCATCATCATGTTCATGTTCACACTGGTTCTCCCACTGCTATGAAGTTCAAAACTGCTGTTGGTGGGGTTAGCTTCAAGAAGCAAAAGCAAGAGTGGGAAATTGATCCTTCCAAACTAATCATCAAGAGTGTTATTGCTCGTGGCACTTTTGGCACTGTCCATCGTGGTATCTATGATGCCCAAGATGTTGCTGTTAAATTGCTGGACTGGGGAGAAGAAGGCCAAAGGACAGAAGCTGAAGTTGCTTCTCTGAGGGCAGCGTTTATACAGGAAGTTGCTGTTTGGCATAAACTTGATCATCCCAATGTCACAAAGTTTATAGGGGCGACAATGGGGTCTGCAGAATTGCAGATACAAACTGATAATGGCCTAATTAGCATGCCAAGCAATGTCTGTTGTGTTGTTGTGGAGTATCTTGCTGGAGGTACACTGAAGTCATACCTAATAAAGAACAGGAGGAGGAAGTTAGCTTTTAAGGTTGTCATCCAGTTGGCACTTGATCTTGCAAGAGGGTTGAGCTATCTTCACTCTCAGAAGATTGTCCATAGAGATGTAAAGACAGAGAACATGCTGTTGGATAAGACACGCACAGTTAAAATTGCTGATTTTGGTGTTGCGCGTGTTGAGGCATCAAATCCTAATGATATGACAGGGGAGACTGGTACTCTTGGTTATATGGCTCCAGAGGTTTTAAATGGCAACCCCTATAACAGGAAATGTGATGTGTACAGTTTTGGTATCTGTTTATGGGAGACATATTGTTGTGACATGCCATATCCTGACCTAAGTTTCTCAGAAATCACTTCAGCCGTTGTTCGCCAGAATTTGAGACCAGAAATACCAAGATGTTGCCCAAGTTCTCTAGCAAATGTAATGAAGAAATGCTGGGATGCGAGCCCCGATAAGCGGCCAGAGATGGATGAGGTAGTTTCCATGCTGGAAGCCATTGACACATCCAAAGGTGGAGGGATGATCCCTTATGATCAGCAGCAGGGTTGTCTTTGCTTCCGCAAGCATAGAGGGCCTTGA 1365 0.4249 MCPHGCEKEEEEDEEQATQQNQLKHPQPRKNSFFFSVFLYFFTLKPSSSSSYIYIDREKDRERLKNKMKESSDGFVRADQIDLKSIDEQLERHLNKVLTIEKKKRTEEEDADHHHVHVHTGSPTAMKFKTAVGGVSFKKQKQEWEIDPSKLIIKSVIARGTFGTVHRGIYDAQDVAVKLLDWGEEGQRTEAEVASLRAAFIQEVAVWHKLDHPNVTKFIGATMGSAELQIQTDNGLISMPSNVCCVVVEYLAGGTLKSYLIKNRRRKLAFKVVIQLALDLARGLSYLHSQKIVHRDVKTENMLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWETYCCDMPYPDLSFSEITSAVVRQNLRPEIPRCCPSSLANVMKKCWDASPDKRPEMDEVVSMLEAIDTSKGGGMIPYDQQQGCLCFRKHRGP. 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01528 454 CDD STKc_MAP3K-like 157 425 - -
Seca11g01528 454 FunFam Kinase suppressor of Ras 1 140 235 - -
Seca11g01528 454 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 96 428 - -
Seca11g01528 454 FunFam Serine/threonine-protein kinase HT1 251 436 - -
Seca11g01528 454 SMART serkin_6 151 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01528 454 Coils Coil 83 103 - -
Seca11g01528 454 MobiDBLite consensus disorder prediction 1 26 - -
Seca11g01528 454 SUPERFAMILY Protein kinase-like (PK-like) 136 425 IPR011009 -
Seca11g01528 454 ProSiteProfiles Protein kinase domain profile. 151 428 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01528 454 Pfam Protein tyrosine and serine/threonine kinase 153 425 IPR001245 GO:0004672|GO:0006468
Seca11g01528 454 PRINTS Tyrosine kinase catalytic domain signature 396 418 IPR001245 GO:0004672|GO:0006468
Seca11g01528 454 PRINTS Tyrosine kinase catalytic domain signature 352 374 IPR001245 GO:0004672|GO:0006468
Seca11g01528 454 PRINTS Tyrosine kinase catalytic domain signature 286 304 IPR001245 GO:0004672|GO:0006468
Seca11g01528 454 PRINTS Tyrosine kinase catalytic domain signature 248 261 IPR001245 GO:0004672|GO:0006468
Seca11g01528 454 Gene3D Transferase(Phosphotransferase) domain 1 252 443 - -
Seca11g01528 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Seca11g01528 454 Gene3D Phosphorylase Kinase; domain 1 139 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01528 Seca-Chr11 16969552 16974713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01528 68 386 MAP Kinase Kinase Kinase AT5G50000 79.751 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca11g01528 PK_Tyr_Ser-Thr 1.6e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01528 - - gmx:100807921 717.227