Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01516 ATGAGCAGAATTCAACTTGAAGGCCAACAAAAGGTTGGTATTGGCAATTTGAAGTACTCATCTTCTCCATCTCCTTTCTCTACATTCCAAACTCCAAATGATGGTGATATTAGTAATGACAAAGAAGCAACATCATCATCTTCATCTCTTAGCAGAATCAGTCCACTTATTTTGCTAGTTATAATAGTTCTTGCAGTTATCTTCTTCATCTATGGACTTGTCCATTTGGTTCTATGGTTTCTGATGAAAAGGCCATCTTCTTCATCTCTTTATAATTCCAATAGATTCCCAGAAGCCACAAGAACCCGTGCTCTTCAAAGGCAGCTTCAACAGCTCTTTCACTTGCATGATTCAGGTCTAGACCAAGCTCTCATAGATGCTCTTCCTGTTTTCTACTACCAAGATTTGATGGGTTTGAAGGAACCTTTTGATTGTGCTGTGTGTCTCTGTGAGTTTTCAGACCAAGACAAGTTGAGGTTGCTTCCCATGTGCAGCCATGCCTTTCACATGAATTGCCTTGACACATGGCTTCTCTCAAATTCTACATGTCCTCTTTGTAGAGCAACTCTTTCCAGCTCTAGTTTCCCTGTGGAAAATCCAATATTTAATGTTGACAACTCTTTGGTTCTTTCAAATAGGTTCAGAGTCACAAGTGAGGAAGAGAATAATGGGTGTTCAGATAGTCAAAGACAAGTAACTGCAGAGGAACAAATAGGTGGGAAAAGGGTGTTTTCTGTGAGACTTGGAAAATTCAGAAATTATGGAATGGAGGGTGGAGAGGTAAGAGGAGGAATAGTAGAGGATAGTAGTTGTAGTTTGGATGGTAGGAGATGCTATTCCATGGGTTCATATCAGTATGTGGTTCGTGATTCAAATCTGCAAGTGGTGTTATCTCAATGTTGTGATGACAGAAGAGGTGAAGAAAATGGGAATGTGGAGGGAAAGAGGATAGGTAACACAACAAAAGGTGAGAGCTTCTCTGTTTCCAAGATCTGGCTTTGGTCCAAGAAGAGCAAATTTCATAGTTGTAATGATGATTTCCCTTGA 1047 0.4002 MSRIQLEGQQKVGIGNLKYSSSPSPFSTFQTPNDGDISNDKEATSSSSSLSRISPLILLVIIVLAVIFFIYGLVHLVLWFLMKRPSSSSLYNSNRFPEATRTRALQRQLQQLFHLHDSGLDQALIDALPVFYYQDLMGLKEPFDCAVCLCEFSDQDKLRLLPMCSHAFHMNCLDTWLLSNSTCPLCRATLSSSSFPVENPIFNVDNSLVLSNRFRVTSEEENNGCSDSQRQVTAEEQIGGKRVFSVRLGKFRNYGMEGGEVRGGIVEDSSCSLDGRRCYSMGSYQYVVRDSNLQVVLSQCCDDRRGEENGNVEGKRIGNTTKGESFSVSKIWLWSKKSKFHSCNDDFP. 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01516 348 CDD RING-H2_EL5-like 144 187 - -
Seca11g01516 348 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 194 IPR013083 -
Seca11g01516 348 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Seca11g01516 348 SMART ring_2 145 186 IPR001841 -
Seca11g01516 348 MobiDBLite consensus disorder prediction 15 47 - -
Seca11g01516 348 FunFam RING-H2 finger protein ATL46 107 192 - -
Seca11g01516 348 Pfam Ring finger domain 144 187 IPR001841 -
Seca11g01516 348 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 47 332 - -
Seca11g01516 348 SUPERFAMILY RING/U-box 124 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01516 Seca-Chr11 16744796 16745842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01516 41 339 C3H Transcription Factor Family AT2G18650 42.398 7.37e-59 194
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01516 - - ccaj:109807149 433.335