Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01501 ATGGCATCATTTGCAGGCACTACCCAGAAATGTAAAGTATGTGAAAAGAAAGTCTACTGGGTGGAACAGCTCACTGCTGACAACAAGGTGTACCACAAGTCTTGCTTCAGATGTCACCACTGCAAGGGCACCCTCAAGCTGAGTAATTATTGTTCTTTTGAGGGTGTTCTATACTGTAAGCCTCATTATGACCAACTCTTTAAGATGACTGGAAGTTTGGACAAAAGTTTTGAAGGTATTCCAAGAATTGCTAGAGTAGAAAGATCTGCTGATCAGGTCCAAATCAACAGCAAGATCTCAAGATTATTTGCTGGAACTCAAGAAAAGTGTGTTGGTTGCAAGAAAACAGTGTACCCAATTGAAAAGGTATATGTGGGTGTTGATGGCAAATCTTACCATAAGTCATGCTTCAGGTGCACCCATGGAGGTTGTGTAATCAGCCCATCAAATTATGTGGCCCATGAACATCGTCTTTATTGTAGACACCACCATACTCAGCTCTTCAAGCAGAAGGGTAACTTTAGTCAATTTGACAAGCATGAAAATGGTCACGTGATCACTGAGACTGAGAACACAACATCCGAGTAA 588 0.415 MASFAGTTQKCKVCEKKVYWVEQLTADNKVYHKSCFRCHHCKGTLKLSNYCSFEGVLYCKPHYDQLFKMTGSLDKSFEGIPRIARVERSADQVQINSKISRLFAGTQEKCVGCKKTVYPIEKVYVGVDGKSYHKSCFRCTHGGCVISPSNYVAHEHRLYCRHHHTQLFKQKGNFSQFDKHENGHVITETENTTSE. 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01501 195 ProSiteProfiles LIM domain profile. 9 69 IPR001781 -
Seca11g01501 195 ProSitePatterns LIM zinc-binding domain signature. 11 45 IPR001781 -
Seca11g01501 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 138 177 - -
Seca11g01501 195 ProSiteProfiles LIM domain profile. 108 170 IPR001781 -
Seca11g01501 195 SMART lim_4 109 163 IPR001781 -
Seca11g01501 195 SMART lim_4 10 62 IPR001781 -
Seca11g01501 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 37 77 - -
Seca11g01501 195 FunFam LIM domain and actin-binding 1 104 176 - -
Seca11g01501 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 36 - -
Seca11g01501 195 Pfam LIM domain 110 167 IPR001781 -
Seca11g01501 195 Pfam LIM domain 11 65 IPR001781 -
Seca11g01501 195 FunFam LIM domain and actin-binding 1 5 75 - -
Seca11g01501 195 CDD LIM1_SF3 7 68 - -
Seca11g01501 195 PANTHER OS06G0237300 PROTEIN 2 93 - -
Seca11g01501 195 Gene3D Cysteine Rich Protein 104 176 - -
Seca11g01501 195 Gene3D Cysteine Rich Protein 5 75 - -
Seca11g01501 195 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 102 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01501 Seca-Chr11 16600068 16604366 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Seca11g01501 LIM 1.4e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01501 K09377 - gmx:100792627 372.859