Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01487 CACGAAGCCCCACTCTATTTCTTAGATCTTAACGGTCCTCTCTCTCTCTCTCTCCATCTTCTCCACTTTCTGCTCCCCTCTCTCTCTTCCCTCCAAATTTCGAATTCCTCAGATCCATCATCCATGTCCTCCTCTGCAGTGCCAGCGCCAGATCCTCTCTCTTCCAGACACTACACCTACAACCGCAAACAAAAATCCCTCGGTCTCCTCTGCACCAATTTCTTGAGCTTGTACAATCGAGACGCCGTCCACTTGATTGGCCTCGACGACGCCGCTTCCCGATTAGTCCTGGTGGATTTAGTAGTGCCTCAATTTTTTATGCTTGATCTGTGGTCTGTCTGGGTTTATTCTGCTGCACTAGGATCCTATTTGGAGTTGGGGGTAGAGAGAAGACGGATCTATGATATAGTCAACGTTTTGGAGAGTATTGGGGTGCTTGCAAGAAAGGCCAAGAATCAATATACCTGGAAAGGTTTTGGGGCTATTTCCCTGGCTTTAAAGGAGCTCAAGGATGAAGGTTTAAGGGAGAACTACAATGCCTTTGAGGGTGCCAACGATAATACAAAGGTGTCTGATGATGAGGATGATGAAGAAACGTCATTGAATCCCAACACTGGAAGTCAGAATGACAAGTCAAACTCTAATTCTATTATCTCCAAATCTGTGAAAAATGATAATCGAAGGGAAAAATCTCTGGCCCTGCTCACTCAAAATTTCGTCAAGCTCTTTGTCTGCTCTAACATGGAAATGATCTCCCTTGATGATGCAGCCAAATTGTTGCTTGGGGATGCCCATAATTCATCAATAATGAGAACAAAAGTTAGACGCCTCTATGATATTGCAAATGTGCTATCCTCCATGAACCTTATTGAGAAGAATCTCAAGAAACAAAAAAAATTGGAAAATGGTAGTGGCCTAGGTCAGGAAGATAAAAGCAACTTAACACAAGGCACAAAACAGACTTCAAGGAGCTATCAGTTTGGTCCTTTCGCTCCATCTTACGTGTCCACAGTTGGAACCTCTGAGAATAATGGTGTGAAGCAGGTGCATGACTGGGAGAGTCTCGCTTCTGCACATTGCCCTCAGTATCAAAATCAAGCTTTGCGAGAACTATACTCCCATTACATGGAAGCATGGAAATCGTGGTACTCTGAAGTTGCTGGGAAGAAGACAATACAAATTTTGTAA 1188 0.4386 HEAPLYFLDLNGPLSLSLHLLHFLLPSLSSLQISNSSDPSSMSSSAVPAPDPLSSRHYTYNRKQKSLGLLCTNFLSLYNRDAVHLIGLDDAASRLVLVDLVVPQFFMLDLWSVWVYSAALGSYLELGVERRRIYDIVNVLESIGVLARKAKNQYTWKGFGAISLALKELKDEGLRENYNAFEGANDNTKVSDDEDDEETSLNPNTGSQNDKSNSNSIISKSVKNDNRREKSLALLTQNFVKLFVCSNMEMISLDDAAKLLLGDAHNSSIMRTKVRRLYDIANVLSSMNLIEKNLKKQKKLENGSGLGQEDKSNLTQGTKQTSRSYQFGPFAPSYVSTVGTSENNGVKQVHDWESLASAHCPQYQNQALRELYSHYMEAWKSWYSEVAGKKTIQIL. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01487 395 SUPERFAMILY "Winged helix" DNA-binding domain 61 156 IPR036390 -
Seca11g01487 395 PANTHER TRANSCRIPTION FACTOR E2F 35 332 IPR015633 GO:0000978|GO:0006357
Seca11g01487 395 Gene3D - 57 161 IPR036388 -
Seca11g01487 395 MobiDBLite consensus disorder prediction 183 223 - -
Seca11g01487 395 SMART E2F_TDP_2 62 158 IPR003316 GO:0005667|GO:0006355
Seca11g01487 395 SMART E2F_TDP_2 227 302 IPR003316 GO:0005667|GO:0006355
Seca11g01487 395 Pfam E2F/DP family winged-helix DNA-binding domain 229 297 IPR003316 GO:0005667|GO:0006355
Seca11g01487 395 Pfam E2F/DP family winged-helix DNA-binding domain 63 158 IPR003316 GO:0005667|GO:0006355
Seca11g01487 395 Gene3D - 222 302 IPR036388 -
Seca11g01487 395 MobiDBLite consensus disorder prediction 306 325 - -
Seca11g01487 395 MobiDBLite consensus disorder prediction 201 221 - -
Seca11g01487 395 FunFam E2F transcription factor-like E2FE 222 302 - -
Seca11g01487 395 MobiDBLite consensus disorder prediction 300 325 - -
Seca11g01487 395 SUPERFAMILY "Winged helix" DNA-binding domain 226 296 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01487 Seca-Chr11 16403833 16410479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01487 42 386 E2F-DP Transcription Factor Family AT3G01330 41.162 7.29e-85 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca11g01487 E2F_TDP 2.2e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01487 K09391 - zju:107415708 372.474