Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01475 ATGTCACGCGCCAGCACCGCCGCGGACTCCGCCGTCTCCGGCGAGATCATGCTCTTCGGAGTTAGAGTCGTGGTTGATTCCATGAGGAAGAGCGTGAGTATGAACAACCTCTCACAGTACGAGCATCCTCAAGACACCAACAACAACAACAACAATAACAGCAAAGACGTTCTCGCCGCCGGTTACGCCTCCGCCGATGACGCCGTTCCTCATAACTCCGGCAGGCAGCGCGAGCGCGAGCGCAAGCGAGGGATTCCGTGGACGGAGGAAGAGCACAAGCTGTTCCTGGTAGGATTGCAGAAAGTAGGGAAAGGCGATTGGAGGGGAATCTCAAGGAACTACGTGAAAACGCGAACGCCAACACAAGTTGCTAGCCATGCTCAGAAGTACTTTCTCCGCAGAAGTAATCTAAATCGCCGTCGCCGTAGATCCAGTCTCTTTGATATCACTACCGACACGGTCTCTGCAATCCCAATGGAGGAAGAACAGGTTCAGAATCAAGATAGCGTGTCCCATTCGTCACAGCCTGTGTGCCCTGAAACTAGCAAAATCAATGGATTTCCTATGATGCCGGTATATCAGTTGGGTGTTAATGAGAGTCCAATGGAAGAACTCTCTCTGGGACAAGGAAACGTGAAACAGAATGTTCCAACCAAGCTATTCCGTCCAATTCCTGCTGTTCCAGATCCTAAAGCTTCCACCATGTCTGATATCACCTCCAGTTCGAGTTCAGCTGTTGACCCACCAACACTTTCCCTCGGGCTATCCTTCTCATCTGATCAAAGGCAAACATCATCAAGACATTCAGCTTTACATGCAATTCCATGTCTCAATAATGGAGATAGCATCATTAGTGTTGCTTGA 864 0.5 MSRASTAADSAVSGEIMLFGVRVVVDSMRKSVSMNNLSQYEHPQDTNNNNNNNSKDVLAAGYASADDAVPHNSGRQRERERKRGIPWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVSAIPMEEEQVQNQDSVSHSSQPVCPETSKINGFPMMPVYQLGVNESPMEELSLGQGNVKQNVPTKLFRPIPAVPDPKASTMSDITSSSSSAVDPPTLSLGLSFSSDQRQTSSRHSALHAIPCLNNGDSIISVA. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01475 287 ProSiteProfiles Myb-like domain profile. 79 131 IPR001005 -
Seca11g01475 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 135 IPR017930 -
Seca11g01475 287 SUPERFAMILY Homeodomain-like 81 136 IPR009057 -
Seca11g01475 287 MobiDBLite consensus disorder prediction 65 84 - -
Seca11g01475 287 PANTHER TRANSCRIPTION FACTOR KUA1 8 229 - -
Seca11g01475 287 MobiDBLite consensus disorder prediction 221 249 - -
Seca11g01475 287 MobiDBLite consensus disorder prediction 233 249 - -
Seca11g01475 287 CDD SANT 86 131 IPR001005 -
Seca11g01475 287 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 133 IPR006447 GO:0003677
Seca11g01475 287 Pfam Myb-like DNA-binding domain 86 131 IPR001005 -
Seca11g01475 287 FunFam transcription factor MYB1R1 85 136 - -
Seca11g01475 287 Gene3D - 85 137 - -
Seca11g01475 287 ProSiteProfiles SANT domain profile. 87 135 IPR017884 -
Seca11g01475 287 SMART sant 83 133 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01475 Seca-Chr11 16223782 16225654 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca11g01475 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01475 - - psat:127073868 413.305