Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01469 ATGGTGTCCACATCTGAGAAGAAGAAAACCCTTCACTCCCTCATCGCTTCAAACCTCACTAAGCTCACTATTCCTTCTTCTTCCACCAACGATCCTAACCCATCTCCTTCCACTGCCAGCCCCCACGTCATCCACAGTAGGTCCCACTCCTTCGTAGGTCCATCCCCGCGCTTCCCCCCTCCCTCTTCCTCTTCCCTCTTCTTTCTCGACGAAGAATTCCCTTCTCACAGCAGCGACGAAGATGAACCCGAACCAAAAAAGCAAGAGAAGAAAGTGGTCCCCAAAATTGGCCCCGCGGATTTCCAGATTCTGAGAGTTGTAGGGCAGGGTGCCTTTGGTAAGGTCTTTCTGGTTAAAAAAAAGGGCGATTGTTCAAACGGTGACGGTGTCTTCGCCATGAAGGTCATGAGGAAGGACACCATCATCAAAAAGAATCACGTTGATTATATGAAAGCTGAAAGAGATATTCTCACTAAAGTGCTTCATCCTTTCATTGTTCAGCTCCGCTACTCTTTCCAAACCAAATCAAAGTTATATTTGATTTTGGACTTTATAAATGGAGGGCATCTCTTCTTTCACTTATACCGGCAGGGAATTTTCAGTGAGGATCAGGCAAGGATTTACACTGCTGAGATAGTATCTGCTGTTTCACATCTTCACAAGAACGGCATCGTGCATCGGGATCTTAAACCTGAAAACATACTTATGGATGCTGATGGCCATGTAATATGGCCATGCCCACCTACTTAG 750 0.4613 MVSTSEKKKTLHSLIASNLTKLTIPSSSTNDPNPSPSTASPHVIHSRSHSFVGPSPRFPPPSSSSLFFLDEEFPSHSSDEDEPEPKKQEKKVVPKIGPADFQILRVVGQGAFGKVFLVKKKGDCSNGDGVFAMKVMRKDTIIKKNHVDYMKAERDILTKVLHPFIVQLRYSFQTKSKLYLILDFINGGHLFFHLYRQGIFSEDQARIYTAEIVSAVSHLHKNGIVHRDLKPENILMDADGHVIWPCPPT. 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01469 249 Gene3D Transferase(Phosphotransferase) domain 1 185 242 - -
Seca11g01469 249 CDD STKc_AGC 107 242 IPR045270 GO:0004674|GO:0005524
Seca11g01469 249 ProSitePatterns Protein kinases ATP-binding region signature. 107 134 IPR017441 GO:0005524
Seca11g01469 249 MobiDBLite consensus disorder prediction 20 67 - -
Seca11g01469 249 FunFam Non-specific serine/threonine protein kinase 99 227 - -
Seca11g01469 249 PANTHER RIBOSOMAL PROTEIN S6 KINASE 47 243 - -
Seca11g01469 249 ProSitePatterns Serine/Threonine protein kinases active-site signature. 224 236 IPR008271 GO:0004672|GO:0006468
Seca11g01469 249 Gene3D Phosphorylase Kinase; domain 1 99 184 - -
Seca11g01469 249 SMART serkin_6 101 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01469 249 MobiDBLite consensus disorder prediction 20 45 - -
Seca11g01469 249 Pfam Protein kinase domain 101 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01469 249 SUPERFAMILY Protein kinase-like (PK-like) 90 242 IPR011009 -
Seca11g01469 249 MobiDBLite consensus disorder prediction 73 92 - -
Seca11g01469 249 ProSiteProfiles Protein kinase domain profile. 101 249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01469 249 FunFam AKT serine/threonine kinase 1 185 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01469 Seca-Chr11 16177501 16182014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01469 41 243 AGC Kinase Gene Family AT3G08720 58.447 3.23e-79 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC-Pl Seca11g01469 Pkinase 5.9e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01469 K04688 - gmx:100798259 317.005