Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01454 ATGGGACACAAAAAGCGAAACCCTGCTGTTCGTTCGAAACATTCTCCGGCGGCTTCTCCGGTGGCGCAATCGGCCATCGGCGGAGCCGCCAATGGTCCCACTTTTCCCGACCCTGACTCCCCTTGCTGCAATGTTTCCGATCACAATATCCCTAACCCTAGCAAGATCGAATTGGCTTCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCAATCTGAGGGTTCCGATTACTCCTCAATTAAGCTCGAATGCGAGCGAGCCCTCACCACGTATCGGCGCGGTAACCACAATAGGGCAATGAAGCTCATGAAGGAGTTGTGCACGAAGGAGGAGGGCTCGTCTCACTCGGCGTTTGTTCACCGAGTTCACAGCTTCGTGTGTTATAAAGTGGCGTCGGCTATTACCGACCCGGCCGCGAAGCAACGGCATTTGAAGAACGCTATTGAGTCTGCGCGGAGAGCGGTTGAGCTTTCGCCGAATTCGGTTGAGTATGCGCATTTCCATGCCACTGTGTTGTTGGAGGCAGCAACTGAGGGGAAAGACTATGAGGAGGTGGTGCACGAGTGTGAGAGGGGGCTTGCCGTTGAAAACCCCACTGATCCTTTGAAGGAGACCTTGCAGGATGAGAGTGAGCAGAAAGTGTCCACTGTGGAAGGACGGATAGCACATGTGCAGAATGAGTTGCGGCAGCTGATTCAAAAGTCAAATATTGCTTCCTTGTCTTCTTGGATGAAGAATTTGAGTAATGGGGAGGAGAGGTTTCGGTTGATTCCTCTAAGGAGGCCTGCGGAGGACCCGATGGAGGTGAGGTTAGTTCAGACTAGAAGGCCAAATGAGATCAAGAAGGTGACTAAGACACCCGAGGAAAGAAGAAAAGAGATTGAAGTTCGAGTTGCCGCAGCAAGGCTGTTGCAGCAGAAGTCAGAGTCACCCCATTCTCCGAATGAAGGAGATAGGGATGACAGAGCATTGGATTCATCTTCAGGGTCTGGTCAGAGGATAGGCGATAGGCGAAGGCATAGAAAGAATGGCTCTACAGATGAAAGGAGAAATTGGGTGCTGTCATATTGGAATTCTGTGAGTATGGATATGAAGAAGGAGTGGCTTAGGATTAATATTTACGATCTCAAGTCCCACTACGGGTCTTCAAAGGATACTTTGCCAAAAGATATTTTATCAGAAGCTTTGTCTTATGCTGATGCCAATAAAACATGGAAATTTTGGGGTTGCTGCCGTTGTGATCAGAAATTTTCCAATCCAGAATGTCACAGACGGCATATTGTGCAGGATCACATGGAGAGTCTCTCTTTGAAAATGCAAAGACTTTTGCCCCAAAATATTGACAATGAATGGATTGAGATGATTCTTAATTGTTCTTGGAAGCCTTTGGATGTATCAGCTGCAGTTAAAATGCTTGACAATAAAGCAAAATTCAGAAGCTCTTCATTTCCTGAGGATTCATACTTGGGTCATCATACTAAGGACTACGATGATTGTTTTAAAGATGCAAGCAACTCTTCCTATGAGAAGGAAAGTTTAGGCTACAGTCTTCATAATTGTACGACAGCAAGTGGTAATTATTGTAAAATTGCAGAAAGTGATGTCAGAGAAGGTGTTGATGATCATCAATCTATGGCAAATCCTGTTACTGATTGTTGGCCAGTATCTGATGACTCCGAGCGTGCAAAACTTCTGGAGAAAATTCATGCAGTATTTGAGATGCTTATTAGACACAAATGTCTTGCTGCTAGTCATCTTAACAAGGTCATACAATTTAGTATGGGTGAGATACAAGGTCTTGCTGCTGGTTCTCAACTTCTAAAACATGGTGTAGATCAAACACCAATGTGCATATGCTTTCTGGGAGCTTCACAGCTTAAGAAAATTCTCCAATTTCTGCAGGAAATATCTCATGCTTGTGGGTTGGGCAGATATCCTGATAAAAGTAGTAGTCCCATGAATGATTTGCATAATATTAGTCAAGGTCCTGAGATCAAAGATAAGGTTGTTCTTGTTGCAGATGCATCATGCCTCCTTCTGGATGAGTGTTTACTGCCAACACAAGTTACTCCTGGTACAGCCCAGGGGGCTGTCTTGGATGATGTGGCAGCCCCGAGTTCTCCTGATGGAAGTTCACACAACAACGATGCTTTTCTATCCTGGATATTTTCAGGTATGCCTATTGGGGATCAATTGACATTATGGATACGGACCAAAGAAGATAAAATACGTCGAGGAGTGGAAACAGTCCAGACACTTGAGAAGGAGTTTTATCACCTACAAAGCTTATGTGAGAAGAAGTGTGAGCGTATAAGTTATGAGGAAGCACTGCAGACAGTGGAGGATCTTTGTCTTGAAGAAGGTAAGAAGCGGGAAAATGTTGGTGAATTTGTTCAGCGAAGCTATGAGTCTGTCTTAAGAAAGCGGAGAGAAGAGCTCATTGAGAGTGAGAATGATGTGATGTACGTTAGCAATAGGTTTGAGTTGGATGCTATATCAAATGTCTTGCAAGAAGCAGAAGCGATGAATGTTAATCAATTTGGCTATGAGGAAACTTATGCTGGTGCGAGTTCTCATTCTCAGTTATGTGATTTGGAATCTGGTGAAGAAGATGAATGGAGAATGAAGGACTACTTGCATCAAATGGATGGCTGCATAGAAATTGCTATTCAGAAACTGAAAGAGCACTTATCTATAGAGCTTAGCAAAATTGATGCCCGAATAATTAGAAATATTACAGAGATGCAGCAGTTGGAACTCAAGCTTGGGCCTATTTGTGCTAATGATTATCGAGCAATATTAGTGCCTTTAGTGAAGTCATACCTAAGGGCACTTTTGGAAGATTTAGCTGAGAAAGATGCAAGAGAGAAATCTGATGCTGCAAGTGAAGCATTTTTAGCTGAACTTGCTCTTGATTCCAAGAAGGTTGTTAAAGGGGGAAGTGAGAACATGAGACATGTAGAGAAGACAAAAGATAAGAAAAAGAATAAAGATCACAGAAAAACAAAAGATTTGAAGGCCACAAGTAGTCATGTGCAGCCCTTGCATCAATCTACAACTCTCGATTCCGATCTAGTTGCACCTGATAGTGACTTTCAAGATCACGAGGTTGTTTCTATCAATGGTGATGATTTGGAACAACATGAAGAGGAATTTAGACGTAAAATGGAGCTAGAAGAGGAGGAAAAAAAACTTGAAGAAACTTTGGAATATCAACGAAGGATTGAAAATGAGGCCAAACAGAAGCACCTCGCAGAGCAACAAAAGAAATCATCTGGGTCATATTTAGAGGGAGTGATGGAGAAACTTCAAGATTGTCAATTGAATGTGGTTGCTGATGGCTTAGATACACATGAACATGTAAGACTACCTATGCAGGAGCAGTTGCCAAAGGAGAATGGGTGCCCAAGCAATCTGAATGGTGTACTTATTACCACAGCAAATGGATCCATGGAGCCAACTAAATCTTCAGCTGATTCAGCTGCTCAAAAGAGTAATCATTTACATCAGTCAAAAGTTAAACAAGCAGATATGCCTAATGGAATTGTTCCAGAGAATGGTCTACCTTTGTCTGATCGGCGTGCAGTAAAAAAGCATAGACGGCACAAGAATTCTTCCAGAATGGTTGATGGAAAGCATGAATCTGTCTCATTGGAAAAGGAGAATATCGAGGATTCACATACTGACCATCACTTAAAAGAGCAGGCTAAGTTCCATAACAATCAAGATGCTAACAATGTGTGGGAAAACAATGGACCAAAGGTGATGAAAGAATTGCAAGTGGAAGATGAGGAGGAGGAAAGATTCCAAGCTGATCTTAAAATGGCTGTACGCCAAAGCCTGGACACATATCAAGCACGTGGAAATTTGCCTTCAGCTTCCAGTCTAAGAATGTCGCAGAGAACTTCTTCACAAATAGATTATTCAGGTTTTCCACCTGTGGAAGACTCGACTGAGGATGTTAATAGAGCTACTTTGCTTGGTACTGGACTGAGAAATGAAGTGGGTGAATATAATTGTTTTCTCAATGTTATTATACAGTCATTGTGGCATTTAAGACGCTTTCGGGTGGAATTTCTTGGCAGATCAAGATCAGAACATGATCACGTGGGTGATCCCTGTGTTGTCTGTGCGTTGTATGAAATATTTACTGCACTGGAACTTGCATCAAAGGATTCAAGAAGAGAAGCAGTTGCACCTACTTCCCTGCGGATAGCCCTAAGCAATCTATATCCACATAGTAACTTCTTCCAAGAGGCTCAAATGAATGATGCTTCTGAGGTACTGGCAGTGATATTTGACTGCCTTCATCAATCATTTACTCGTGGTTCAAGTGCTTTTGATGCAGAATCAGTGGAAAGCAACTGCAAGGGGTCTTGGGATTGTGCAAATGGTAGTTGTATAGCACATACACTTTTTGGAATGAATGTTTTTGAACAAATGAACTGCTACCATTGTGGTCTTGAGTCCAGGCATTTGAAGTATACTTCCTTCTTTCACAATATAAATGCCAATGCCCTCCGGACAATGAAGGTTATGTTTGCTGAAAGCTCCTTTGATAAGCTTTTGAATCTTGTGGAGTTGAACCATCAACTGGCTTGTGATCTAGAAGTTGGTGGCTGTGGCAAACTCAACCACATCCATCACTTTCTTTCAACTCCACCTCATGTTTTTATGACAGTTCTAGGTTGGCAAAATACATGTGAGAGTGCTGATGATATAACGGCAACTCTGGCAGCCCTGAGCACCAAGATAGATATCAGTGTCCTTTATCGCGGTTTAGATCCTAAAAGCACCCATAACTTGGTTTCAGTGGTATGTATTTGA 4824 0.4279 MGHKKRNPAVRSKHSPAASPVAQSAIGGAANGPTFPDPDSPCCNVSDHNIPNPSKIELASPPPPPPPPSQSEGSDYSSIKLECERALTTYRRGNHNRAMKLMKELCTKEEGSSHSAFVHRVHSFVCYKVASAITDPAAKQRHLKNAIESARRAVELSPNSVEYAHFHATVLLEAATEGKDYEEVVHECERGLAVENPTDPLKETLQDESEQKVSTVEGRIAHVQNELRQLIQKSNIASLSSWMKNLSNGEERFRLIPLRRPAEDPMEVRLVQTRRPNEIKKVTKTPEERRKEIEVRVAAARLLQQKSESPHSPNEGDRDDRALDSSSGSGQRIGDRRRHRKNGSTDERRNWVLSYWNSVSMDMKKEWLRINIYDLKSHYGSSKDTLPKDILSEALSYADANKTWKFWGCCRCDQKFSNPECHRRHIVQDHMESLSLKMQRLLPQNIDNEWIEMILNCSWKPLDVSAAVKMLDNKAKFRSSSFPEDSYLGHHTKDYDDCFKDASNSSYEKESLGYSLHNCTTASGNYCKIAESDVREGVDDHQSMANPVTDCWPVSDDSERAKLLEKIHAVFEMLIRHKCLAASHLNKVIQFSMGEIQGLAAGSQLLKHGVDQTPMCICFLGASQLKKILQFLQEISHACGLGRYPDKSSSPMNDLHNISQGPEIKDKVVLVADASCLLLDECLLPTQVTPGTAQGAVLDDVAAPSSPDGSSHNNDAFLSWIFSGMPIGDQLTLWIRTKEDKIRRGVETVQTLEKEFYHLQSLCEKKCERISYEEALQTVEDLCLEEGKKRENVGEFVQRSYESVLRKRREELIESENDVMYVSNRFELDAISNVLQEAEAMNVNQFGYEETYAGASSHSQLCDLESGEEDEWRMKDYLHQMDGCIEIAIQKLKEHLSIELSKIDARIIRNITEMQQLELKLGPICANDYRAILVPLVKSYLRALLEDLAEKDAREKSDAASEAFLAELALDSKKVVKGGSENMRHVEKTKDKKKNKDHRKTKDLKATSSHVQPLHQSTTLDSDLVAPDSDFQDHEVVSINGDDLEQHEEEFRRKMELEEEEKKLEETLEYQRRIENEAKQKHLAEQQKKSSGSYLEGVMEKLQDCQLNVVADGLDTHEHVRLPMQEQLPKENGCPSNLNGVLITTANGSMEPTKSSADSAAQKSNHLHQSKVKQADMPNGIVPENGLPLSDRRAVKKHRRHKNSSRMVDGKHESVSLEKENIEDSHTDHHLKEQAKFHNNQDANNVWENNGPKVMKELQVEDEEEERFQADLKMAVRQSLDTYQARGNLPSASSLRMSQRTSSQIDYSGFPPVEDSTEDVNRATLLGTGLRNEVGEYNCFLNVIIQSLWHLRRFRVEFLGRSRSEHDHVGDPCVVCALYEIFTALELASKDSRREAVAPTSLRIALSNLYPHSNFFQEAQMNDASEVLAVIFDCLHQSFTRGSSAFDAESVESNCKGSWDCANGSCIAHTLFGMNVFEQMNCYHCGLESRHLKYTSFFHNINANALRTMKVMFAESSFDKLLNLVELNHQLACDLEVGGCGKLNHIHHFLSTPPHVFMTVLGWQNTCESADDITATLAALSTKIDISVLYRGLDPKSTHNLVSVVCI. 1608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01454 1607 MobiDBLite consensus disorder prediction 1290 1310 - -
Seca11g01454 1607 MobiDBLite consensus disorder prediction 311 325 - -
Seca11g01454 1607 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1328 1607 IPR028889 -
Seca11g01454 1607 MobiDBLite consensus disorder prediction 979 1023 - -
Seca11g01454 1607 MobiDBLite consensus disorder prediction 56 71 - -
Seca11g01454 1607 Coils Coil 1041 1077 - -
Seca11g01454 1607 MobiDBLite consensus disorder prediction 1 76 - -
Seca11g01454 1607 MobiDBLite consensus disorder prediction 302 344 - -
Seca11g01454 1607 Pfam Protein of unknown function (DUF629) 353 886 IPR006865 -
Seca11g01454 1607 SUPERFAMILY Cysteine proteinases 1328 1606 IPR038765 -
Seca11g01454 1607 MobiDBLite consensus disorder prediction 1007 1023 - -
Seca11g01454 1607 Pfam Protein of unknown function (DUF627) 85 196 IPR006866 -
Seca11g01454 1607 Pfam Ubiquitin carboxyl-terminal hydrolase 1329 1558 IPR001394 GO:0004843|GO:0016579
Seca11g01454 1607 Gene3D Tetratricopeptide repeat domain 75 232 IPR011990 GO:0005515
Seca11g01454 1607 Gene3D Cysteine proteinases 1314 1606 - -
Seca11g01454 1607 PANTHER UBIQUITIN SPECIFIC PROTEINASE 1 1606 - -
Seca11g01454 1607 MobiDBLite consensus disorder prediction 1150 1171 - -
Seca11g01454 1607 MobiDBLite consensus disorder prediction 1290 1314 - -
Seca11g01454 1607 Coils Coil 213 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01454 Seca-Chr11 15982252 15990760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01454 75 1606 C2H2 Transcription Factor Family AT3G47890 56.294 0.0 1614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01454 - - gmx:100799759 2460.64