Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01452 ATGGGGAACTGCAACGCGTGCGTGAGAGCAGATGTGATAGAGTCAAACCGGTCTAACGAGTCGAACCGGGGGAGAAAGAGGAAAACCAAACCGAATCCATTCTCAGAGGAAGGAGTCGGTTCGGGTGCTACGATCCAGGTTCTGAAGGAGGTGAATCCGTGGACACGAATCAGCGACAAGTATGTGTTAGGTCGGGAACTAGGTCGGGGAGAGTTTGGGATAACGTACCTTTGCACAGACAGGGAAACGAAGCAGGAACTTGCGTGCAAGTCGATCTCGAAGCGGAAGCTGAGGACGGCGGTGGATGTGGAAGACGTGCGGCGAGAGGTGGCGATTATGTCGACGCTACCGGACCATCCTAATGTGGTGAAGCTGAAAGCAACGTATGAGGATGATGAGAATGTTCACCTTGTAATGGAGCTTTGTGGTGGTGGCGAGCTTTTTGATAGGATCGTTGCTAGGGGACATTACAGTGAGCGTGCGGCGGCACACGTGGCAAGGACTATTGCGGAGGTTGTGAGAATGTGTCATATCAATGGTGTCATGCATAGAGACCTTAAGCCTGAGAATTTCCTCTTTGCTAATAAGAAAGAGAATTCTGTTCTTAAGGCCATTGACTTTGGCCTCTCTGTGTTTTTCAAGCCTGGGGAGAGATTTTCAGAGATTGTTGGGAGTCCTTACTATATGGCACCAGAGGTTTTGAAGAGGAATTATGGACCTGAAGTTGATGTGTGGAGTGCTGGGGTGATTCTTTATATTTTGTTATGTGGGGTGCCTCCGTTTTGGGCAGAGACGGAACAAGGGGTTGCTTTGGCGATTTTGAGAGGGGTTATTGACTTCAAGAGGGAGCCTTGGCCTCAGATTTCAGACAGTGCTAAGAGCCTAGTGCGGCAGATGTTGGAACCAGATCCTAAGAAGCGCTTGACGGCTGAACAGGTGCTTGAACACCCCTGGCTACAAAATGCGAAGAAAGCTTCAAATGTACCATTAGGAGATATTGTGAGGACACGGCTTAAGCAGTTCTCTGTGATGAATAGATTCAAAAAGAAAGCTCTTCGGGTAATTGCAGAACATTTATCTGTTGAAGAGGTAGAAATAATCAGAGATATGTTTACACTAATGGATACTGACAAAGATGGCAAAGTAACATATGATGAACTAAAGGCCGGTTTGCGGAAAGTTGGTTCACAATTGGCTGAGCCAGAGATAAAGTTGCTGATGGATGTGGCTGATGTGGATGGGAATGGAGTACTTGACTATGGAGAGTTTGTAGCCGTGACAATTCACTTGCAAAGAATGGAGAATGATGAGCACTTCCGCAAAGCATTCATGTTTTTTGACAAAGATGGGAGTGGGTATATTGAGTTAGGTGAGCTAGAGGAAGCATTAGCAGATGAGTCAGGAGGAATTGAAACTGATGTTCTGAACGAGATCATGCGTGAAGTTGACACTGACAAGGATGGTTGTATCAGTTATGAGGAGTTTGTGGCCATGATGAAAACTGGAACTGACTGGAGAAAAGCATCTAGGCAGTATTCAAGGGAGAGATTCAAGAGCTTGAGCATAAATTTGATGAAGGACGGCTCACTTCAGCTTCATGATGCGATTAGTGGTCAAGCTGTTATGGTTTAA 1632 0.4632 MGNCNACVRADVIESNRSNESNRGRKRKTKPNPFSEEGVGSGATIQVLKEVNPWTRISDKYVLGRELGRGEFGITYLCTDRETKQELACKSISKRKLRTAVDVEDVRREVAIMSTLPDHPNVVKLKATYEDDENVHLVMELCGGGELFDRIVARGHYSERAAAHVARTIAEVVRMCHINGVMHRDLKPENFLFANKKENSVLKAIDFGLSVFFKPGERFSEIVGSPYYMAPEVLKRNYGPEVDVWSAGVILYILLCGVPPFWAETEQGVALAILRGVIDFKREPWPQISDSAKSLVRQMLEPDPKKRLTAEQVLEHPWLQNAKKASNVPLGDIVRTRLKQFSVMNRFKKKALRVIAEHLSVEEVEIIRDMFTLMDTDKDGKVTYDELKAGLRKVGSQLAEPEIKLLMDVADVDGNGVLDYGEFVAVTIHLQRMENDEHFRKAFMFFDKDGSGYIELGELEEALADESGGIETDVLNEIMREVDTDKDGCISYEEFVAMMKTGTDWRKASRQYSRERFKSLSINLMKDGSLQLHDAISGQAVMV. 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01452 543 ProSitePatterns Protein kinases ATP-binding region signature. 67 90 IPR017441 GO:0005524
Seca11g01452 543 SMART efh_1 474 502 IPR002048 GO:0005509
Seca11g01452 543 SMART efh_1 402 430 IPR002048 GO:0005509
Seca11g01452 543 SMART efh_1 438 466 IPR002048 GO:0005509
Seca11g01452 543 SMART efh_1 366 394 IPR002048 GO:0005509
Seca11g01452 543 MobiDBLite consensus disorder prediction 15 41 - -
Seca11g01452 543 ProSitePatterns EF-hand calcium-binding domain. 447 459 IPR018247 -
Seca11g01452 543 FunFam calcium-dependent protein kinase 13 147 327 - -
Seca11g01452 543 FunFam Calcium-dependent protein kinase 7 328 503 - -
Seca11g01452 543 CDD EFh 438 500 IPR002048 GO:0005509
Seca11g01452 543 Gene3D - 328 503 - -
Seca11g01452 543 Gene3D Transferase(Phosphotransferase) domain 1 147 327 - -
Seca11g01452 543 Gene3D Phosphorylase Kinase; domain 1 62 146 - -
Seca11g01452 543 FunFam Calcium-dependent protein kinase 1 63 146 - -
Seca11g01452 543 SUPERFAMILY Protein kinase-like (PK-like) 48 343 IPR011009 -
Seca11g01452 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 181 193 IPR008271 GO:0004672|GO:0006468
Seca11g01452 543 ProSiteProfiles EF-hand calcium-binding domain profile. 362 397 IPR002048 GO:0005509
Seca11g01452 543 ProSiteProfiles Protein kinase domain profile. 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01452 543 ProSitePatterns EF-hand calcium-binding domain. 411 423 IPR018247 -
Seca11g01452 543 Pfam Protein kinase domain 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01452 543 CDD STKc_CAMK 60 318 - -
Seca11g01452 543 Pfam EF-hand domain pair 437 500 IPR002048 GO:0005509
Seca11g01452 543 Pfam EF-hand domain pair 367 426 IPR002048 GO:0005509
Seca11g01452 543 ProSitePatterns EF-hand calcium-binding domain. 483 495 IPR018247 -
Seca11g01452 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 55 495 - -
Seca11g01452 543 SUPERFAMILY EF-hand 347 526 IPR011992 -
Seca11g01452 543 ProSiteProfiles EF-hand calcium-binding domain profile. 434 469 IPR002048 GO:0005509
Seca11g01452 543 ProSitePatterns EF-hand calcium-binding domain. 375 387 IPR018247 -
Seca11g01452 543 MobiDBLite consensus disorder prediction 16 33 - -
Seca11g01452 543 SMART serkin_6 61 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01452 543 ProSiteProfiles EF-hand calcium-binding domain profile. 398 433 IPR002048 GO:0005509
Seca11g01452 543 ProSiteProfiles EF-hand calcium-binding domain profile. 470 505 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01452 Seca-Chr11 15910663 15915401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01452 1 543 EF-hand Containing Proteins AT1G74740 79.670 0.0 901
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Seca11g01452 Pkinase 4.2e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01452 K13412 - gmx:100809838 954.896