Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01438 ATGGGTGCTTCAAAAGTTGGCAGATGTGGAAGAAAAAGGAGAACAATGGCTGAGGCCACAGCCAAACATCTCTCTAGCAAATTGAGTAAACTTGATTTGGCTGATCAAGAATGGATCAATAGGATTCCAGAATGTCCAGTATATCACCCATCAGAGCAAGAGTTTGAGAATCCTTTAGTTTATCTACAGAAGATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCTCCAATTGCTGCCTCCAATCCAGCTTCTTTTGTCTTAATGAAAGAGAAAAAGGACTTCAAGTTTGAAACAAATGTACAGCCTCTTCGGCTTGCTAAATGGAATGAGAATGATATAATAACTTTTTCTATGAGAGGCAGAAAATATACATATCATGAATTTGAAGCTCTGGCAAACAAGGCCAAATTCAGAAGATTTTGCAGTTCTGAAGGTCTTTCTTCTTCATATGTGGAAAAGGAGTTCTGGTATGAGATGGCACATGGAGAGAAGGGAACAGTTGAGTATGGAGTCAATGTTGAGGGTACTGCCTTTTCATGTGATCCTAATGACAGGCTTGGAACAAGCAAATGGAATTTGAAGAATTTCTCACGGCTTCTGCAGTCCCCTTTGCGTTTAGTTGACAGGGAAATTCCAGGGGTAACTGATCCTATGCTTTACATTGGGATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTATAGCATAAATTATCATCACACTGGTGCTAATAAAACTTGGTATGGCGTGCCTGGCTATGCAGCCTCTCAATTTGAAAAGACTGTCTTAAATCATGTGTATTGTAATAATAAGATTTTAACAAAACATGGAGAGGATGGAGCTTTCAAATTTCTTGCATATAAAACAACCATGTTCCCTCCAAGTGTTTTGTTACAACATGATGTGGCAATTTACAAGGCTGTGCAGAAGCCAGGAGAGTTTGTGATCACCTTTCCTAGAGCATATCATGCTGGATTTAGTCATGGTTTTAACTGTGGAGAAGCAGTAAACTTTGCTATTGGAGATTGGTTTCCACTTGGGGCTGCAGCTACCAAACGATATGCACATCTCAGAATGCTACCTATAATTCCATATGAGGAACTTCTTTGTAAAGAGGCAATGCTGGTTTACAAGTCCTCAAAAGTCAAAAGTTCCAAGAACAAACCAGAAGACACATCATCTTATTGTGCTATTTTATTGTCTTTCTTGCATCTTATGCAATTTTATAAGACATCCCTTTTGCGGCTGAACAGTTCAAGAAAGTTATCAAGCTCTGCAAATACATTAGGTTCTCAGATATGCAGCCTCTGCCATAGGGATTGTTATGTAGCTTACTTGTTGTGCAAGTACTGCTATTCTCATCCAATTTGTCTTTTCCATGATATTGCTCCACAGACTTGTTTATGTGGTAGAAAATATACTATTTTCCAGAGGAATGACTTGCTGGATCTGGAAGATGCTGCCAAACGTTTTCAACAGGAAAAAAAATGCCTTGATACGTTATCTCTATCAAATATATTCTCCTATAACAGAAATGAATGCATCAAAGATCTCAAGCAGAATAATCCTTGGCATGAAGAAAGAAGTCCCAGAAGAAGTGCTAATTCTGTAGGGGCAGCATCAAAACTGAAAAGAAGGGTAGCAGACAACATCAAGCACAATGTTGAAAGGAATAAAAAGACAACAATGAAGCATTATAGAAACAATGGGCCTCCATCAGTAATAAGTACCAAAAGACCACGAATCATTTATAACTTGAGAAAAAGGGAATCAAAATTGATCAAACGTGTTCCTTCCCTTTTTGCAACATATGAAAAATTAAAATAA 1851 0.3793 MGASKVGRCGRKRRTMAEATAKHLSSKLSKLDLADQEWINRIPECPVYHPSEQEFENPLVYLQKIAPEASKYGICKIVSPIAASNPASFVLMKEKKDFKFETNVQPLRLAKWNENDIITFSMRGRKYTYHEFEALANKAKFRRFCSSEGLSSSYVEKEFWYEMAHGEKGTVEYGVNVEGTAFSCDPNDRLGTSKWNLKNFSRLLQSPLRLVDREIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHTGANKTWYGVPGYAASQFEKTVLNHVYCNNKILTKHGEDGAFKFLAYKTTMFPPSVLLQHDVAIYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFAIGDWFPLGAAATKRYAHLRMLPIIPYEELLCKEAMLVYKSSKVKSSKNKPEDTSSYCAILLSFLHLMQFYKTSLLRLNSSRKLSSSANTLGSQICSLCHRDCYVAYLLCKYCYSHPICLFHDIAPQTCLCGRKYTIFQRNDLLDLEDAAKRFQQEKKCLDTLSLSNIFSYNRNECIKDLKQNNPWHEERSPRRSANSVGAASKLKRRVADNIKHNVERNKKTTMKHYRNNGPPSVISTKRPRIIYNLRKRESKLIKRVPSLFATYEKLK. 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01438 616 ProSiteProfiles JmjC domain profile. 189 363 IPR003347 -
Seca11g01438 616 FunFam Lysine-specific demethylase isoform A 40 390 - -
Seca11g01438 616 SMART cupin_9 189 363 IPR003347 -
Seca11g01438 616 SUPERFAMILY Clavaminate synthase-like 191 380 - -
Seca11g01438 616 Gene3D Cupin 45 406 - -
Seca11g01438 616 ProSiteProfiles JmjN domain profile. 45 86 IPR003349 -
Seca11g01438 616 SMART JmjN_1 44 85 IPR003349 -
Seca11g01438 616 Pfam JmjC domain, hydroxylase 222 346 IPR003347 -
Seca11g01438 616 PANTHER LYSINE-SPECIFIC DEMETHYLASE 37 568 - -
Seca11g01438 616 Pfam jmjN domain 46 78 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01438 Seca-Chr11 15729161 15734345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01438 8 506 JUMONJI Transcription Factor Family AT2G34880 31.469 3.57e-61 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Seca11g01438 JmjC 4.7e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01438 - - gmx:100809650 923.309