Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01437 ATGCGAACAATCTTATTCTCTACAGAAAGGGTGACCGCTGATAGCAGGGAAAGTGGATTGTTCAGTTTATTCTTGGTTGTATTTGCTGTAATTGCTGCTGGTTATGTGCTTATTAAGGGGCTACAAGATCCTTCAAGGAGCAAGTATAAACTTATACTAAGTTGTTCATTTATTGTTACCTCTGTGATACCGGTTGAGTTACCAATGGAATTGTCAATAGCTGTTAATACTTCTCTGATTGCACTGGCACGGCATGGACTTTTTTGCATAGAACCTTTTCGAGTACCATTTGCTGGGAAGGTTGATATATGTTGTTTTGACAAGACTGGGACACTTACATCTGATGACATGGAGTTTTCTGGAGTTGTTGGGTTGTCAGGAACTACTGATTTGGAATCTGATGAGTAG 408 0.3971 MRTILFSTERVTADSRESGLFSLFLVVFAVIAAGYVLIKGLQDPSRSKYKLILSCSFIVTSVIPVELPMELSIAVNTSLIALARHGLFCIEPFRVPFAGKVDICCFDKTGTLTSDDMEFSGVVGLSGTTDLESDE. 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01437 135 Gene3D - 21 101 - -
Seca11g01437 135 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 99 IPR023298 -
Seca11g01437 135 NCBIfam HAD-IC family P-type ATPase 19 126 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca11g01437 135 Gene3D - 102 116 IPR023214 -
Seca11g01437 135 ProSitePatterns E1-E2 ATPases phosphorylation site. 107 113 IPR018303 -
Seca11g01437 135 PANTHER CATION-TRANSPORTING ATPASE-RELATED 1 126 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01437 Seca-Chr11 15727835 15728636 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01437 1 134 Primary Pumps ATPases AT5G23630 80.597 4.66e-70 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01437 K14950 - vum:124821481 239.195