Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01436 ATGATGGAGGAGGAGGGAAGTTGCGAGAGAGATAGGCACAAAATCCGCAACATATGCATCTTGGCGCACGTGGACCACGGCAAGACCACGCTCGCCGACCAGCTCATCGCGGCGGCAGGCGGCGGGGTCGTTCACCCGAAAGTGGCGGGTCGGGTTCGGTTCATGGACTACCTCGACGAAGAGCAGCGCCGAGCAATCACGATGAAGAGCTCCTCCATCGCCCTCCGCTACAAGGACCACACCGTAAACCTCATCGACTCCCCCGGCCACATTGACTTCTGCGGCGAGGTCTCCACCGCCGCACGCCTCTCCGACGGCGCGCTCCTCCTCGTTGACGCTGTCGAGGGCGTCCACATCCAGACCCACGCCGTCCTCCGACAGTGCTGGATCGAACGCCTCTCCCCTTGCCTTGTCCTCAACAAGCTCGATCGCTTGATCACCGAGTTGAAACTCACTCCCTCCGAAGCCTACACTCGCCTCTTGCGAATCGTTCACGAGGTTAACGGCATCGTCAGCGCTTACAAGTCGCAGAAGTACCTCACCGACGTCGATTCCCTCCTCGCCGGTGGTACCACTTCCGGTGAGCTTCTGGAAGATTACGATGACAACGAGGATGTGTTTCAACCGCAGAAAGGGAATGTCGTATTCGCATGCGCGTTGGATGGTTGGGGTTTTGGGATTCATGAGTTCGCAGAGATATATGCTTCCAAGCTTGGAGCTAGTGTGAATGCGTTGCAGAAAGCCCTGTGGGGTCCACGGTATTTCAACCCTAAGACCAAGATGATTGTTGGGAAGAAAGGGATTGGTGGTGGTAAGGCTAAGCCTATGTTTGTTCAGTTTGTGTTGGAGCCTTTGTGGCAGGTGTATCAGGGGGCTTTAGAAGGGGATAGAGGGTTGCTTGATAAGGTTATTAGGTCCTTTAATTTGCAGGTTCCAGCGAGGGAGTTGCAGAATAAGGATGCTAAGGTGGTGCTTCAATCGGTTATGAGTCGTTGGCTTCCTCTTTCGGATGCCATTTTGTCCATGGCTGTTAAGTGTTTGCCGGACCCTGTCACAGCACAGGCATTTCGGATCTCACGGTTGATTCCCGTACATGAGGTTTCCGGGGATGGTGTTGATCGGAGCATGGTGGAGGAGGCGGAGCTCACGAGGAAAGCGGTGGAGGGGTGTGATTGGAGGCCTGAGGTTCCTTGTGTTGCCTTTGTGGCCAAGATGTTTGCTGTCCCGAGTAGAATGCTTCCTCCCCAAGTGGGGCAGATTGTGGGCAGTTCTGGTGATGATGGAGAGGGTGAGTCAGATGAGTGTTTTCTGGCATTTGCTAGGATCTTTAGTGGGGTTTTGTCGGTGGGGCAGAGAGTTTTTGTGCTTTCTGCTTTGTATGATCCCCTAAAAGGGGAATCAATGCAAAAGCATATACAGGAGGCTGAATTGAAATCCTTGTATCTGATGATGGGCCAAGGGTTGAAAGTAGTGAAATCTGCCAAGGCAGGGGATGTTGTTGCTATCCGAGGCCTTGGCCAGCATATATTGAAAAGTGCTACCCTTTCTTCTACTAGGAACTGTTGGCCTTTTTCTAGTATGGCATTCCAAGTTTCCCCGACTTTGAGAGTCGCAATTGAGCCATCTGACCCTGCAGAGACGGGTGCGCTGCTCAAAGGCTTGAGGCTTCTGAATCGTGCGGATCCGTTTGTAGAGGTCACGGTTTCTGCAAGAGGAGAGCATGTTCTTGCTGCTGCTGGTGAAGTTCATCTTGAGAGATGTATAAAGGACTTGAAGGAGAGGTTTGCGAAAGTTAGCTTGGAAGTCTCTCCACCCCTTGTGTCCTACAAAGAGACCATTGAGGGAGAGGTCTCCAATGTGCTGGAAAATTTGAAAGTTCTTAGTAGGAGCTCAGATTATGTTGAGAAAATAACACCCAATGGAAGATGTGTTGTTCGCGTGCAGGTGATGAAACTTCTACCTTCTCTTACAAAGGTGCTTGATGAAAGCTCTGATTTACTTGGAGATATCATTGGAATAAAGTCGGGGCAGACTGTTAAAAATCTAGAAACCCAAAGACCTAGTATTCTCGATAACAATAATCCAGCTGAAGTGCTAAGAAAACGCATAATGGATGCAGTGGAGAGTGATATTTTGAGCAGGAATGAAAATGACAAGGACCACGCCGAGAAATGTAAATTGAAGTGGCTGAAGCTTTTGAGGAGGATATGGGCACTTGGACCAAGGCAAATTGGTGCCAACATTCTCTTCACTCCTGATAATAAAGCAGAAAGCAATAATACTTCTGTTCTAATTCGTGGATGTTCTCATGTATCTGAAAAGTTGGGCTTTGAGGCTGATTCTAGTAACAGTAACTCAGTTTCTGAGACATCTTCAAATGAGAGCCAAGCCTTGTACATGGATGCTGAGCGTCTTGAGAGTAGTGTTATAACTGGGTTCCAGTTAGCCACTTCAGCTGGACCCTTGTGTGATGAGCCTATGTGGGGTTTGGCATTTGTCATTGAGGCACGCGTATCTCCATTTACAGGGCAGTATGATGAATCTGAAACACACCAACAATCTGAGCAGTATGGAATCTTTGCAGGGCAGGTAATTGCAACTGTCAAAGATGCTTGTAGAGCAGCTGTGCTTCAGAATAAGCCACGGCTAGTTGAAGCAATGTACTTTTGTGAACTGAATACCCCAACTGAATATTTGGGTCCCATGTATGCTGTACTTTCCCGAAGACGGGCCCGAGTCTTGAAGGAAGAGATGCAGGAAGGTTCCCCTTTCTTCACTGTGCATGCATATGTTCCTGTTTCTGAGAGCTTTGGTTTTGCGGATGAGCTTAGAAGGTGGACCTCTGGTGCTGCAAGTGCACTTCTTGTCCTTAGCCACTGGGAAGCACTACCTGAGGATCCTTTCTTTGTACCAAAAACAGAAGAGGAAATTGAAGAGTTTGGAGATGGTTCTAGTGTTCTTCCAAATACAGCAAGAAAGTTAATTGATGCAGTCAGACGGCGTAAGGGCCTTCCTGTGGAGGAAAAGGATTGGATTAGTCTAGGGACTATAGGAAGTAAATGA 3063 0.491 MMEEEGSCERDRHKIRNICILAHVDHGKTTLADQLIAAAGGGVVHPKVAGRVRFMDYLDEEQRRAITMKSSSIALRYKDHTVNLIDSPGHIDFCGEVSTAARLSDGALLLVDAVEGVHIQTHAVLRQCWIERLSPCLVLNKLDRLITELKLTPSEAYTRLLRIVHEVNGIVSAYKSQKYLTDVDSLLAGGTTSGELLEDYDDNEDVFQPQKGNVVFACALDGWGFGIHEFAEIYASKLGASVNALQKALWGPRYFNPKTKMIVGKKGIGGGKAKPMFVQFVLEPLWQVYQGALEGDRGLLDKVIRSFNLQVPARELQNKDAKVVLQSVMSRWLPLSDAILSMAVKCLPDPVTAQAFRISRLIPVHEVSGDGVDRSMVEEAELTRKAVEGCDWRPEVPCVAFVAKMFAVPSRMLPPQVGQIVGSSGDDGEGESDECFLAFARIFSGVLSVGQRVFVLSALYDPLKGESMQKHIQEAELKSLYLMMGQGLKVVKSAKAGDVVAIRGLGQHILKSATLSSTRNCWPFSSMAFQVSPTLRVAIEPSDPAETGALLKGLRLLNRADPFVEVTVSARGEHVLAAAGEVHLERCIKDLKERFAKVSLEVSPPLVSYKETIEGEVSNVLENLKVLSRSSDYVEKITPNGRCVVRVQVMKLLPSLTKVLDESSDLLGDIIGIKSGQTVKNLETQRPSILDNNNPAEVLRKRIMDAVESDILSRNENDKDHAEKCKLKWLKLLRRIWALGPRQIGANILFTPDNKAESNNTSVLIRGCSHVSEKLGFEADSSNSNSVSETSSNESQALYMDAERLESSVITGFQLATSAGPLCDEPMWGLAFVIEARVSPFTGQYDESETHQQSEQYGIFAGQVIATVKDACRAAVLQNKPRLVEAMYFCELNTPTEYLGPMYAVLSRRRARVLKEEMQEGSPFFTVHAYVPVSESFGFADELRRWTSGAASALLVLSHWEALPEDPFFVPKTEEEIEEFGDGSSVLPNTARKLIDAVRRRKGLPVEEKDWISLGTIGSK. 1021
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01436 1020 Pfam Elongation factor Tu GTP binding domain 14 244 IPR000795 GO:0003924|GO:0005525
Seca11g01436 1020 SUPERFAMILY Translation proteins 388 527 IPR009000 -
Seca11g01436 1020 SMART EFG_C_a 882 971 IPR000640 -
Seca11g01436 1020 SUPERFAMILY EF-G C-terminal domain-like 530 605 IPR035647 -
Seca11g01436 1020 CDD EF2 16 235 - -
Seca11g01436 1020 FunFam Translation elongation factor 2 532 608 - -
Seca11g01436 1020 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 13 242 IPR000795 GO:0003924|GO:0005525
Seca11g01436 1020 Gene3D - 881 1013 - -
Seca11g01436 1020 Pfam Elongation factor Tu domain 2 437 515 IPR004161 GO:0005525
Seca11g01436 1020 Gene3D Elongation Factor G (Translational Gtpase), domain 3 532 608 - -
Seca11g01436 1020 Gene3D - 6 208 IPR027417 -
Seca11g01436 1020 FunFam Elongation factor 2-like protein 7 215 - -
Seca11g01436 1020 CDD eEF2_snRNP_like_C 885 964 - -
Seca11g01436 1020 Gene3D - 628 879 IPR014721 -
Seca11g01436 1020 PRINTS GTP-binding elongation factor signature 83 93 IPR000795 GO:0003924|GO:0005525
Seca11g01436 1020 PRINTS GTP-binding elongation factor signature 17 30 IPR000795 GO:0003924|GO:0005525
Seca11g01436 1020 PRINTS GTP-binding elongation factor signature 63 71 IPR000795 GO:0003924|GO:0005525
Seca11g01436 1020 PRINTS GTP-binding elongation factor signature 99 110 IPR000795 GO:0003924|GO:0005525
Seca11g01436 1020 PRINTS GTP-binding elongation factor signature 135 144 IPR000795 GO:0003924|GO:0005525
Seca11g01436 1020 SUPERFAMILY Ribosomal protein S5 domain 2-like 607 884 IPR020568 -
Seca11g01436 1020 Pfam Elongation factor G C-terminus 883 967 IPR000640 -
Seca11g01436 1020 FunFam Elongation factor like GTPase 1 881 1013 - -
Seca11g01436 1020 SUPERFAMILY EF-G C-terminal domain-like 885 983 IPR035647 -
Seca11g01436 1020 CDD aeEF2_snRNP_like_IV 604 889 - -
Seca11g01436 1020 CDD EF2_II 397 518 - -
Seca11g01436 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 348 IPR027417 -
Seca11g01436 1020 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 10 1009 - -
Seca11g01436 1020 CDD EF2_snRNP_III 533 604 - -
Seca11g01436 1020 Gene3D Yeast translation eEF2 (G' domain) 227 333 - -
Seca11g01436 1020 Gene3D Translation factors 350 530 - -
Seca11g01436 1020 FunFam Elongation factor like GTPase 1 227 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01436 Seca-Chr11 15721692 15727330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01436 9 1009 Eukaryotic Initiation Factors Gene Family AT3G22980 71.105 0.0 1446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01436 K14536 - pvu:PHAVU_003G003900g 1695.63