LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g01424	ATGGAAGCTAACAAGCTTAGATTGCTCTTCTTTTGTGTACTTTTTCTTGCTATATTCCCTACCCTCAGGGCTAATATGGCTCAATTTGACCAAATATGGCTGAAGCGATCTCAGGAAGCCAAAAAAGCAGCACAACAGGCTTTCAAGACAAACCCTGAAGAAGTAGCTGATGATTTCAATAAGCACGTCAACAAGGCTGTGAATGGCTTCAATAGCACGAGGAGGGCTTTAGCAAAATACAATGGTCCATGCAATGCCACAAATCCCATTGACAGTTGCTGGAGATGTGATGAAAACTGGGAAAAGAACCGCAAAAAGTTAGCAGATTGTGTTATTGGTTTTGGTCATGGCACAACAGGAGGCAAAGATGGCGAAATTTATGTTGTGGATGATCCATCTGATGATGACCTTGTGAGCCCAAAACCAGGGACTTTGCGACATGCTGTTATTCAAAAGGAGCCACTTTGGATCATTTTTAAAAAAAATATGTCCATCAAACTCAGAGCAGAGCTTCTACTAACTGATAATAAGACTATAGATGGACGTGGTGCAAACGTTCATATTAGTGATGGTGCTCAAATTACATTGCAATATGTGCAAAACATTATCATTCATGGACTGCACATCCATGATATCAAAAGAGCTAGTGGTGGCCTCATCAGAGACTCCATGAATCACTATGGATACCGTTCAATGAGTGATGGTGATGCAATTTCAATGTTTGGAGCTACTAATGTTTGGATAGATCATATTTCTATGTCCAATTGTGATGATGGCCTTGTAGATGCTGTAGAAGGATCAACAGCCATTACCATCTCCAACTGCCATATGACACATCATAATGATGTTATGTTATTCGGTGCGAGTGATACCTACTCAGGAGATAAACTCATGCAAATAACTCTGGCTTTCAACCATTTTGGACAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCGTTCATGTTGTCAACAATGACTACACTCACTGGCTTATGTATGCCATTGGTGGGAGTCAACATCCCACCATCATCAGCCAGGGCAACCGATTTATTGCTCCAGAAAACCGAAATGCAAAAGAGGTCAGAAGAGAAGTGACAAAGAGGGATTATGCACCTGAAAGCGAGTGGAAGAAATGGGATTGGAGATCAGAAGATGACTTAATGATGAATGGAGCCTTCTTTGTTGAGTCTGGAAATAAGGTCACAAATGGTCCCAAGACAGGCATCACTGCAAAGCCTGGTTCATTTGCTGCAAGCCTCACTCGCTTTGCAGGTGCTCTAAAATGTGAACCAAACAAGGCATGCTGA	1317	0.4214	MEANKLRLLFFCVLFLAIFPTLRANMAQFDQIWLKRSQEAKKAAQQAFKTNPEEVADDFNKHVNKAVNGFNSTRRALAKYNGPCNATNPIDSCWRCDENWEKNRKKLADCVIGFGHGTTGGKDGEIYVVDDPSDDDLVSPKPGTLRHAVIQKEPLWIIFKKNMSIKLRAELLLTDNKTIDGRGANVHISDGAQITLQYVQNIIIHGLHIHDIKRASGGLIRDSMNHYGYRSMSDGDAISMFGATNVWIDHISMSNCDDGLVDAVEGSTAITISNCHMTHHNDVMLFGASDTYSGDKLMQITLAFNHFGQGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPENRNAKEVRREVTKRDYAPESEWKKWDWRSEDDLMMNGAFFVESGNKVTNGPKTGITAKPGSFAASLTRFAGALKCEPNKAC.	439

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g01424	438	SUPERFAMILY	Pectin lyase-like	72	432	IPR011050	-
	Seca11g01424	438	Pfam	Pectate lyase, N terminus	25	77	IPR007524	GO:0030570
	Seca11g01424	438	Pfam	Pectate lyase	169	353	IPR002022	-
	Seca11g01424	438	PRINTS	Pollen allergen Amb family signature	170	186	IPR018082	-
	Seca11g01424	438	PRINTS	Pollen allergen Amb family signature	336	355	IPR018082	-
	Seca11g01424	438	PRINTS	Pollen allergen Amb family signature	382	406	IPR018082	-
	Seca11g01424	438	PRINTS	Pollen allergen Amb family signature	314	333	IPR018082	-
	Seca11g01424	438	PRINTS	Pollen allergen Amb family signature	134	159	IPR018082	-
	Seca11g01424	438	PRINTS	Pollen allergen Amb family signature	110	127	IPR018082	-
	Seca11g01424	438	PRINTS	Pollen allergen Amb family signature	234	255	IPR018082	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g01424	Seca-Chr11	15624741	15627505	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g01424	1	438	Polysaccharide Lyase	AT3G01270	56.485	0.0	546

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g01424	K01728		-	gmx:100801864	677.937

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