Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01424 ATGGAAGCTAACAAGCTTAGATTGCTCTTCTTTTGTGTACTTTTTCTTGCTATATTCCCTACCCTCAGGGCTAATATGGCTCAATTTGACCAAATATGGCTGAAGCGATCTCAGGAAGCCAAAAAAGCAGCACAACAGGCTTTCAAGACAAACCCTGAAGAAGTAGCTGATGATTTCAATAAGCACGTCAACAAGGCTGTGAATGGCTTCAATAGCACGAGGAGGGCTTTAGCAAAATACAATGGTCCATGCAATGCCACAAATCCCATTGACAGTTGCTGGAGATGTGATGAAAACTGGGAAAAGAACCGCAAAAAGTTAGCAGATTGTGTTATTGGTTTTGGTCATGGCACAACAGGAGGCAAAGATGGCGAAATTTATGTTGTGGATGATCCATCTGATGATGACCTTGTGAGCCCAAAACCAGGGACTTTGCGACATGCTGTTATTCAAAAGGAGCCACTTTGGATCATTTTTAAAAAAAATATGTCCATCAAACTCAGAGCAGAGCTTCTACTAACTGATAATAAGACTATAGATGGACGTGGTGCAAACGTTCATATTAGTGATGGTGCTCAAATTACATTGCAATATGTGCAAAACATTATCATTCATGGACTGCACATCCATGATATCAAAAGAGCTAGTGGTGGCCTCATCAGAGACTCCATGAATCACTATGGATACCGTTCAATGAGTGATGGTGATGCAATTTCAATGTTTGGAGCTACTAATGTTTGGATAGATCATATTTCTATGTCCAATTGTGATGATGGCCTTGTAGATGCTGTAGAAGGATCAACAGCCATTACCATCTCCAACTGCCATATGACACATCATAATGATGTTATGTTATTCGGTGCGAGTGATACCTACTCAGGAGATAAACTCATGCAAATAACTCTGGCTTTCAACCATTTTGGACAAGGATTGGTGCAGAGGATGCCAAGGTGCAGATGGGGTTTCGTTCATGTTGTCAACAATGACTACACTCACTGGCTTATGTATGCCATTGGTGGGAGTCAACATCCCACCATCATCAGCCAGGGCAACCGATTTATTGCTCCAGAAAACCGAAATGCAAAAGAGGTCAGAAGAGAAGTGACAAAGAGGGATTATGCACCTGAAAGCGAGTGGAAGAAATGGGATTGGAGATCAGAAGATGACTTAATGATGAATGGAGCCTTCTTTGTTGAGTCTGGAAATAAGGTCACAAATGGTCCCAAGACAGGCATCACTGCAAAGCCTGGTTCATTTGCTGCAAGCCTCACTCGCTTTGCAGGTGCTCTAAAATGTGAACCAAACAAGGCATGCTGA 1317 0.4214 MEANKLRLLFFCVLFLAIFPTLRANMAQFDQIWLKRSQEAKKAAQQAFKTNPEEVADDFNKHVNKAVNGFNSTRRALAKYNGPCNATNPIDSCWRCDENWEKNRKKLADCVIGFGHGTTGGKDGEIYVVDDPSDDDLVSPKPGTLRHAVIQKEPLWIIFKKNMSIKLRAELLLTDNKTIDGRGANVHISDGAQITLQYVQNIIIHGLHIHDIKRASGGLIRDSMNHYGYRSMSDGDAISMFGATNVWIDHISMSNCDDGLVDAVEGSTAITISNCHMTHHNDVMLFGASDTYSGDKLMQITLAFNHFGQGLVQRMPRCRWGFVHVVNNDYTHWLMYAIGGSQHPTIISQGNRFIAPENRNAKEVRREVTKRDYAPESEWKKWDWRSEDDLMMNGAFFVESGNKVTNGPKTGITAKPGSFAASLTRFAGALKCEPNKAC. 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01424 438 SUPERFAMILY Pectin lyase-like 72 432 IPR011050 -
Seca11g01424 438 Pfam Pectate lyase, N terminus 25 77 IPR007524 GO:0030570
Seca11g01424 438 Pfam Pectate lyase 169 353 IPR002022 -
Seca11g01424 438 PRINTS Pollen allergen Amb family signature 170 186 IPR018082 -
Seca11g01424 438 PRINTS Pollen allergen Amb family signature 336 355 IPR018082 -
Seca11g01424 438 PRINTS Pollen allergen Amb family signature 382 406 IPR018082 -
Seca11g01424 438 PRINTS Pollen allergen Amb family signature 314 333 IPR018082 -
Seca11g01424 438 PRINTS Pollen allergen Amb family signature 134 159 IPR018082 -
Seca11g01424 438 PRINTS Pollen allergen Amb family signature 110 127 IPR018082 -
Seca11g01424 438 PRINTS Pollen allergen Amb family signature 234 255 IPR018082 -
Seca11g01424 438 PANTHER PECTATE LYASE 18-RELATED 40 436 IPR045032 GO:0030570
Seca11g01424 438 Gene3D - 87 431 IPR012334 -
Seca11g01424 438 SMART amb_all 162 359 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01424 Seca-Chr11 15624741 15627505 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01424 1 438 Polysaccharide Lyase AT3G01270 56.485 0.0 546
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01424 K01728 - gmx:100801864 677.937