Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01420 ATGGTGTCTTGCAAACCTTTTAAACCTTCTTTCTTGGATGTGGTAATAATGCAAGAGGCACCACAATTTTACAGTGAAGAGGAAATGACTCAAGTCAAGAATATATGCAAATTGCATCTACAAGAAAAAAATGATGATGAGCAGAAAGATAATAATAAAAGTTTGATGAAAAAAAGGCATATTCAAATTGAAGACTTGTTTGAGGAAGAGGAAACAGTCACACAGGTTAAAAAAAGATCAAAAAAGATTACTATTAAGGTAAAAACAGTACCACCATCATCACCATTACCACCACCACCATTACTAATACTACCACCATCGCTACCCCCACCGTTGTCATCACCACCGTCACTACTATCACCACCACCAGTACAACCATTGCTACCTGCACCTCCACCAAATTTGCCTACAACATTCAGAAGTTGGATTGAAGAATTGAACGGTTCTGATGTAAATTTTCTCATGCACAAGAAACTTCACTACAGCGATGTGAACACGAATAACAATCGTTTGTCTATGCCACAAAATCAACTTGAGTCTGATTTCCTCACCGAAGCTGAGAAAACAATGTTGGATGAAAAAGCAGGCATTGAAGTGATTGTCTTAGACCCATATCTTAGAGAATTTTCTTTAATCTTGAAGAGGTGGAAGATGAAAAATGTGAGCATCTACAATCTAATAAGGAGTTGGAACAGAGTTGTGCATGAAAATAAATTCGAGAAAAACCATGAACTCCAAATATGTAGCAGATTTAATTTGAATAGAGTTTTCCAACGTCCCATACACCAACTGTGGCCTCTGCCTCGGCGGCAACATGAATGTCCTCCATGCCTTTCACGCCATCATTTTGTCCCAAGAAACCCAGCCAGTACCAACATGAATAAAGAAGACTGGAAGAGTGAAATTAAAGGGAAAATCTGGAAAGGGGTGGAAAGCAGCAGTGAAAGTAGAAGTGTTGATCACAAGATTAGAGTTCCATTCAATCGTGACGCCAAACAGCACCTCCTCGGTCGAGCTCGAGCTCCGTGCCGCATCACAACTCGAGTAAATTTTCGGTTTTATCATCTTCCATATCTTCGCTTCTTCATCATGAGGGACAACAAAGCTCTATGGGAATTATTGTCAAATATTTCAAATTGGGAGACTCGCCAAATGAAAGTACCACCATCATCACCACCACAACTACCATCATCACCATTACCACCACCATTACTAATACTACCACCACCACCACTACCCCCACCGTTGTCATCACCACCGCCACTATCATTATCACCATTACCACCACCACCACCATTACTAATACTACCACCATCACCACCCCCACCATTATCACCACCACCGCCAGCACAACCATTGCTACCCGCACCTCAACCAGATTTGCCTACAACATTCAGAAGTTGGATTGAAGAGTTGAACGGTTCTGATGTAAATTTTCTCATGCACAAGAAACTTCACTACAGCGACATGAGCACAAATAACAATCGTTTGTCCATGCCACAAAATCAACTTAAGTTTGATTTCCTCACCGAAGCTGAGAAAGCAATGTTGGATGAAAATGGAGGCATTGAAGTGATTGTCTTAGACCCATATCTTAGAGAATTTTCTTTAATCCTGAAGAGGTGGAAGATGAAAAATGTGAGAATCTACAATCTAATAAGGAATTGGAACAAAGTTGTGCATGAAAATAAATTCGAGAAAAACCATGAACTCCAAATATGGTCTTGTAGGGTCAATAGCAAATTATACTTTCTGTTATATAAACATTAA 1770 0.3977 MVSCKPFKPSFLDVVIMQEAPQFYSEEEMTQVKNICKLHLQEKNDDEQKDNNKSLMKKRHIQIEDLFEEEETVTQVKKRSKKITIKVKTVPPSSPLPPPPLLILPPSLPPPLSSPPSLLSPPPVQPLLPAPPPNLPTTFRSWIEELNGSDVNFLMHKKLHYSDVNTNNNRLSMPQNQLESDFLTEAEKTMLDEKAGIEVIVLDPYLREFSLILKRWKMKNVSIYNLIRSWNRVVHENKFEKNHELQICSRFNLNRVFQRPIHQLWPLPRRQHECPPCLSRHHFVPRNPASTNMNKEDWKSEIKGKIWKGVESSSESRSVDHKIRVPFNRDAKQHLLGRARAPCRITTRVNFRFYHLPYLRFFIMRDNKALWELLSNISNWETRQMKVPPSSPPQLPSSPLPPPLLILPPPPLPPPLSSPPPLSLSPLPPPPPLLILPPSPPPPLSPPPPAQPLLPAPQPDLPTTFRSWIEELNGSDVNFLMHKKLHYSDMSTNNNRLSMPQNQLKFDFLTEAEKAMLDENGGIEVIVLDPYLREFSLILKRWKMKNVRIYNLIRNWNKVVHENKFEKNHELQIWSCRVNSKLYFLLYKH. 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01420 589 SUPERFAMILY DNA-binding pseudobarrel domain 478 585 IPR015300 -
Seca11g01420 589 Pfam B3 domain-containing protein At2g31720-like 143 235 IPR005508 GO:0003677
Seca11g01420 589 Pfam B3 domain-containing protein At2g31720-like 469 561 IPR005508 GO:0003677
Seca11g01420 589 MobiDBLite consensus disorder prediction 389 457 - -
Seca11g01420 589 SUPERFAMILY DNA-binding pseudobarrel domain 152 245 IPR015300 -
Seca11g01420 589 MobiDBLite consensus disorder prediction 107 131 - -
Seca11g01420 589 MobiDBLite consensus disorder prediction 384 457 - -
Seca11g01420 589 PANTHER B3 DOMAIN PLANT PROTEIN-RELATED 452 588 IPR005508 GO:0003677
Seca11g01420 589 Gene3D - 470 588 IPR015300 -
Seca11g01420 589 Gene3D - 144 263 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01420 Seca-Chr11 15590866 15596401 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01420 465 586 B3 DNA Binding Superfamily AT1G05930 30.000 2.66e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01420 - - gmx:102663171 159.458