LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca11g01417	ATGGAGTTTGCTTCAGGGAGATCTGGTGATGATGGAGGTAGTGAAGACCAGAAGAAAAGTGAGTATGGTGTTGGTGATAAACAAGACACTATTGTCGAGGAGCCACCTTTGGCTAATAACCAAAGATCCATGGTGGAGGCTGAACCAAGCACATCCTCTGCAGCAAAAAAGGAAGAGATTGATGATAAGCTTGATGCTACTAAAGCCGAAATGGGCGAGGTGAGAGAAGAAAATGAACGGTTAAAGATGTCCTTGAACAAAATAATGAATGAATATCGGACACTACAAATGCAATTTCACGATATGGTTAAGGAAGAAACAAAAAAGAATGATGATGATAACCAAGTCCATCAAGAGATAATAGAGGAATCGGATCTTGTTTCTCTCAGCCTTGGAAGAGTTCCAAGGAATGACGAGAAAGTAGTTAAAGTCTCTAAACCATTGAAGGATGAAGAGTTTAACCAAGACTTGACTCTTGGACTGGACTGTAAATTTGAAACATCAAAATCAGGGAGCACAACTGAAGCTTTGCCAAATCCAAGCCCTGTGAATAGTTCTCATGAAGTGCCAAAGGAAGAGGCTGGGGATGAGACTTGGCCACATACTAATAAGGCACTCAAGACAATGAGAGACACAGAGGATGAAGTTGCTCAGCAAACACCTGCTAAAAAAGCTAGAGTTTGCGTTAGAGCAAGATGTGATACCCCAACGATGAATGATGGATGCCAATGGAGGAAATATGGACAAAAGATTGCAAAGGGAAATCCTTGCCCTCGAGCTTACTATCGCTGTACAATTGCACCATCATGCCCAGTAAGAAAACAGGTGCAGAGATGTGCTGAAGACACCTCCATTTTAATCACTACCTATGAAGGTACCCATAACCACAATCTTCCTCTTTCAGCCACTGCCATAGCTTCCACAACTTCTGCAGCTGCTTCCATGTTGTTATCTGGTTCATCAACCTCTCACTGTGGCTCAATGCCTTCAACAATTACAACAGCTAATAATAATCTCCATGGCCTGAACTTTTACCTATCAGATGGTTCCAAACCAAAGCAATTATACCCTGCACTCTCATCTTCATCTTCACATCCAACCATCACACTTGACCTCACTTCTTCAAATCCAACAACTTCCTCATCTCCCTTTGTCAGATTTACTTCAACCTACAACAACAACAACCAACCTAGATATCCTTCTTCCACAAGCCTGAGCTTCAATTCCTCAGATCAATCCAACACAAATTCTTGGAGCAATGGGATCCTCAACTATAGTACTCATCAACCATATAACAATAATAGAAACAATAATGTCCTTAACAGTTTAAACTTTGGAAGACCAACAATGGAAAATATCTACCAATCCTACATGCAAAGGAATAACAACAACAACTCAAACCCTCCTCATCAAGGTGCTTTACCAGACACTATATCTGCAGCAACAAAAGCAATCACAGCAGACCCAAGTTTTCAGTCAGCTTTGGCAACAATGCTTACTTCATTTATTGGGAGCACCCAAGGAAATCAAAGTGGTACTGTTGGAGAAATTTTGGGTCAAAAAATGAAATGGGCAGAGCTGTTTCCGGTGTCTTCTAGTTCTACAACCTTGCCTTCAACATCTAAAGTCAATGGTTATGGCTCAAGTTTATTGAACAAAACGCCTGTGAGTACACAAACGACAAGTTTGATGTTTCCACCGTCGTCTTTGCCATTTTCCACCTCCAAAACTGCATCTGGATCTCCTGGGGATAATAGTGACAACACCAATTAG	1773	0.4129	MEFASGRSGDDGGSEDQKKSEYGVGDKQDTIVEEPPLANNQRSMVEAEPSTSSAAKKEEIDDKLDATKAEMGEVREENERLKMSLNKIMNEYRTLQMQFHDMVKEETKKNDDDNQVHQEIIEESDLVSLSLGRVPRNDEKVVKVSKPLKDEEFNQDLTLGLDCKFETSKSGSTTEALPNPSPVNSSHEVPKEEAGDETWPHTNKALKTMRDTEDEVAQQTPAKKARVCVRARCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAPSCPVRKQVQRCAEDTSILITTYEGTHNHNLPLSATAIASTTSAAASMLLSGSSTSHCGSMPSTITTANNNLHGLNFYLSDGSKPKQLYPALSSSSSHPTITLDLTSSNPTTSSSPFVRFTSTYNNNNQPRYPSSTSLSFNSSDQSNTNSWSNGILNYSTHQPYNNNRNNNVLNSLNFGRPTMENIYQSYMQRNNNNNSNPPHQGALPDTISAATKAITADPSFQSALATMLTSFIGSTQGNQSGTVGEILGQKMKWAELFPVSSSSTTLPSTSKVNGYGSSLLNKTPVSTQTTSLMFPPSSLPFSTSKTASGSPGDNSDNTN.	591

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca11g01417	590	FunFam	probable WRKY transcription factor 31	223	300	-	-
	Seca11g01417	590	MobiDBLite	consensus disorder prediction	9	28	-	-
	Seca11g01417	590	MobiDBLite	consensus disorder prediction	168	200	-	-
	Seca11g01417	590	SUPERFAMILY	WRKY DNA-binding domain	231	299	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g01417	590	SMART	WRKY_cls	238	298	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g01417	590	MobiDBLite	consensus disorder prediction	168	186	-	-
	Seca11g01417	590	MobiDBLite	consensus disorder prediction	559	590	-	-
	Seca11g01417	590	MobiDBLite	consensus disorder prediction	52	77	-	-
	Seca11g01417	590	Coils	Coil	57	98	-	-
	Seca11g01417	590	Gene3D	WRKY domain	222	300	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g01417	590	MobiDBLite	consensus disorder prediction	388	411	-	-
	Seca11g01417	590	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	32	509	IPR044810	GO:0003700
	Seca11g01417	590	ProSiteProfiles	WRKY domain profile.	233	299	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca11g01417	590	MobiDBLite	consensus disorder prediction	1	77	-	-
	Seca11g01417	590	Pfam	WRKY DNA -binding domain	239	296	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca11g01417	Seca-Chr11	15539319	15544335	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca11g01417	71	570	WRKY Transcription Factor Family	AT5G15130	38.545	4.81e-82	264

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Seca11g01417		WRKY	8e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca11g01417	-		-	pvu:PHAVU_003G192000g	694.886