Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01411 ATGGGAAATTGCTTTAGAGCTCGTCCAGAGGTTGATAACCATCTAAGCTCCCAACCCTGTTCTGATGTAACAAAAGTTCCTCGTAGAAGCACCCATTTGTTAGCACATTCAGGTCTAACAGTGCATGGACACAGTGATGAAGGTAAACCTGTGATTCTCCCCACTCCAAGATCTGAAGGGGACATACTCTCATCCCCACATTTAAAAGCCTTCACATTTAATGATCTTAAGAATGCCTCTAGAAATTTCTGTCCTGATAATCTAATTGGACAAGGGGGATTTGGTTATGTCTATAAGGGGTGGATTGATGGTCAATCCCTTGGGGCTGCAAAGTCTGGATTGGGAATAGCTGTAGCTGTGAAGAAGCTTAAGCCTGAAGGTTTTCAAGGGCATAAGGAGTGGCTGGTAGTTTTCTTTATTTTGCAGTCTGAAGTCAATTATCTTGGCCAACTTCATCATCCAAATCTTGTCAACCTTATTGGATACTGCCTGGAGGGGGATAACCGGCTTCTAGTGTATGACTACATGGCCAATGGAAGCTTGGAAAATCATCTATTTCGCAAGAGCAGACAAGTACTTCCTTGGGCAACAAGAGTCAAAGTTGCTATTGGTGCTGCTCGAGGTCTCACCTTCCTACATGACTCTAATCAACAAATTATCTACCGTGATTTCAAGGCTTCTAATATTTTATTAGATTCGGAATTTAATGCAAAACTCTCAGACTTTGGATTGGCCAAAGCAGGGCCCACTGATGATCGTTCTCATGTTTCCACTCAAGTCCTGGGCACACAAGGCTATGCTGCTCCTGAATATATTGCTACAGGTCGGCTGACTACAAGGTGTGATGTCTATAGCTTTGGGGTTGTGCTATTGGAACTACTATCAGGGCGCCATGCTGTTGATAAAACAAAATCCGGAGTGGAACATAATTTGGTAGATTGGGCAAAGCCCTATTTGGGTGATAGGAGGAAATTGTTCCGGATTATGGACACCAAGTTAGAAGGACAATATCCTCAGAGAGCAGCTTATACAGTTGCAATTCTTGCATTACAATGTATTAGTGAGGCCAAGATTAGACCACAAATGTCTGAGGTTTTGGCTACCTTGGAACATCTCCCAGCTATCAGACATTCAGCTAGCCCATCTAGAGCAGAGGAAAAACCCATCCCAAGTCCCATAAGAGAGAGGGTTTGA 1194 0.4338 MGNCFRARPEVDNHLSSQPCSDVTKVPRRSTHLLAHSGLTVHGHSDEGKPVILPTPRSEGDILSSPHLKAFTFNDLKNASRNFCPDNLIGQGGFGYVYKGWIDGQSLGAAKSGLGIAVAVKKLKPEGFQGHKEWLVVFFILQSEVNYLGQLHHPNLVNLIGYCLEGDNRLLVYDYMANGSLENHLFRKSRQVLPWATRVKVAIGAARGLTFLHDSNQQIIYRDFKASNILLDSEFNAKLSDFGLAKAGPTDDRSHVSTQVLGTQGYAAPEYIATGRLTTRCDVYSFGVVLLELLSGRHAVDKTKSGVEHNLVDWAKPYLGDRRKLFRIMDTKLEGQYPQRAAYTVAILALQCISEAKIRPQMSEVLATLEHLPAIRHSASPSRAEEKPIPSPIRERV. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01411 397 FunFam Serine/threonine-protein kinase PBS1 176 387 - -
Seca11g01411 397 CDD STKc_IRAK 89 372 - -
Seca11g01411 397 SUPERFAMILY Protein kinase-like (PK-like) 67 371 IPR011009 -
Seca11g01411 397 Pfam Protein tyrosine and serine/threonine kinase 87 367 IPR001245 GO:0004672|GO:0006468
Seca11g01411 397 Gene3D Phosphorylase Kinase; domain 1 55 175 - -
Seca11g01411 397 FunFam Serine/threonine-protein kinase BIK1 53 175 - -
Seca11g01411 397 Gene3D Transferase(Phosphotransferase) domain 1 176 387 - -
Seca11g01411 397 MobiDBLite consensus disorder prediction 380 397 - -
Seca11g01411 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Seca11g01411 397 PANTHER OS01G0588500 PROTEIN-RELATED 47 372 - -
Seca11g01411 397 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Seca11g01411 397 MobiDBLite consensus disorder prediction 377 397 - -
Seca11g01411 397 ProSiteProfiles Protein kinase domain profile. 83 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01411 Seca-Chr11 15438948 15443352 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01411 69 391 Glycoside Hydrolase AT3G07070 49.390 2.71e-100 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Seca11g01411 PK_Tyr_Ser-Thr 4.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01411 - - gmx:100791844 608.986