Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01403 ATGGGATCAGAGAGTCTGGCCCCGATGGTTGAGACATCAAAAAACAGGTCTTCTCCCGGTAAAATGAACCAAGGGAAAGTTCCTAAGAGAATTCACAAGGCTGAAAGGGAGAAAATGAAGCGTGAACATTTGAATGAACTCTTTCTTGATCTTGCCAACGCACTTGATCTAAATGAGCAGAACAATGGAAAGGCTTCCATATTGTGTGAAGCTTCTAGGCTTCTAAAGGATTTGTTCAGTCAGATTGAATCCCTCAAGAAAGAGAACGTGTCTCTGTTGTCTGAATCTCATTATGTTACCATGGAGAAAAATGAGCTGAAGGAGGAAAATTGTAGCCTAGAAACTCAAATTGAGAAACTTCAAGGTGAGATACAGGCTAGAGTGGCTCAATCCAAACCTGACCTGAATGCACCTCCTCATTTGGAACTTGAGCCACCAGAGCAGACAAATTTCCCAGGACAGAGTCTCCAATTGCCTACCATAGAACCTATGCAGCAAGGACCAGCGGTTTTGGTTGTCCCCTTTCGTCCTGATCTTCAAGCTTCATTTCCAGCTCCTAATGTTGCTGAGCTAACACCAAAACCTACATCTGTTGTCAGTAAACCACATGCCAGGTATCCCACACCAGCAGATTCATGGCCATCACAGCTGCTTGGAGAGCAATAA 666 0.4414 MGSESLAPMVETSKNRSSPGKMNQGKVPKRIHKAEREKMKREHLNELFLDLANALDLNEQNNGKASILCEASRLLKDLFSQIESLKKENVSLLSESHYVTMEKNELKEENCSLETQIEKLQGEIQARVAQSKPDLNAPPHLELEPPEQTNFPGQSLQLPTIEPMQQGPAVLVVPFRPDLQASFPAPNVAELTPKPTSVVSKPHARYPTPADSWPSQLLGEQ. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01403 221 Coils Coil 75 95 - -
Seca11g01403 221 Coils Coil 103 123 - -
Seca11g01403 221 MobiDBLite consensus disorder prediction 183 221 - -
Seca11g01403 221 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 94 IPR036638 GO:0046983
Seca11g01403 221 MobiDBLite consensus disorder prediction 1 22 - -
Seca11g01403 221 CDD bHLH_AtILR3_like 33 107 - -
Seca11g01403 221 Gene3D - 25 103 IPR036638 GO:0046983
Seca11g01403 221 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 28 78 IPR011598 GO:0046983
Seca11g01403 221 MobiDBLite consensus disorder prediction 1 34 - -
Seca11g01403 221 PANTHER TRANSCRIPTION FACTOR BHLH47 9 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01403 Seca-Chr11 15180453 15183307 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01403 15 221 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G47640 50.855 1.01e-66 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01403 - - gmx:100782436 361.303