Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01402 ATGGAGGGAGGTGATGATCTCCACAACCACCACCATCACCACCACCGTCAAAACTTTCCATTCCAGCTTCTGGAGAAAAAAGAGGATCAAGAAGCCGCATCTTGCTCCACTTCCTCCCCATACCCTTCCCTAGCAATCTCCGCAGAACCAAGCACATCCAATTCAAACCGATCCAACAACCAACTCGTTCCCGCACCTACCTCCGAACCTGGAAACAAAAAGCCACCGCCAAAACGAACCTCAACCAAAGACCGTCACACCAAAGTCGAAGGCCGCGGCCGCCGCATCCGAATGCCGGCACTCTGCGCCGCCAGAGTTTTCCAACTAACTCGCGAACTCGGCCATAAATCCGACGGCGAAACCATCGAGTGGCTCCTCCAACAAGCCGAACCCGCCGTCATCGCCGCCACCGGAACCGGAACAATCCCTGCTAACTTCACCTCACTCAACATATCTCTCAGAAGCTCAGGCTCCTCCATGTCTGTTCCATCTCAACTAAGATCCTCATACTTCAACCCAAATTTCTCCGTTCAACAACGCAGAACCTTGTTCCCTGGAATCGGTTTGTCCTCAGAGAACAGCAACACGTCAACGCTGCTCAATTTCCAATCCAATAACCTAACCACCGCCGGCGGCATGTTGCAGGCGAAGCAGGAGGGGGGCGGAGGCGGTGGTGGAGGTGCTCCGTCTTCGTCGACGTTGGATTTATCGGAAACTAGCGCGGAGGAAGGTTTGGGAAGGAAAAGAAGAACAACAGAACAAGACTTATCCTCAACGCAGCATCAAATGGGGAGTTATCTGCTGCAGTCGAGTGCAGGGGCGATTCCTGCAAGTCACGCTCAGATTCCAGCGAATATATGGATGGTAGCAAATTCTAATAACCAAGTTATGAGTGGTGATCCTATATGGACCTTTCCACAAGTGAATAATAGTGGTTTGTATAGAGGAAGCATGTCAAGTGGGTTGCATTTTATGAACTTTCCAACACCTATGGCTTTGTTGCCAAGTCAGCAATTAGGTTCATCTGTTGGAGGGAGCAGTGGTGGGAATATGAATGAAGGACATTTGAGTATGCTTGCAGGGCTTAGTCCTTATCGACCTGTTTCAGAGTCTCAACAACAGAGTGGGTCACAATCACATCGCGGTGGTAGCCATGATCGACATGATAGCACAAGTCACCACTCTTAG 1188 0.5059 MEGGDDLHNHHHHHHRQNFPFQLLEKKEDQEAASCSTSSPYPSLAISAEPSTSNSNRSNNQLVPAPTSEPGNKKPPPKRTSTKDRHTKVEGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTSLNISLRSSGSSMSVPSQLRSSYFNPNFSVQQRRTLFPGIGLSSENSNTSTLLNFQSNNLTTAGGMLQAKQEGGGGGGGGAPSSSTLDLSETSAEEGLGRKRRTTEQDLSSTQHQMGSYLLQSSAGAIPASHAQIPANIWMVANSNNQVMSGDPIWTFPQVNNSGLYRGSMSSGLHFMNFPTPMALLPSQQLGSSVGGSSGGNMNEGHLSMLAGLSPYRPVSESQQQSGSQSHRGGSHDRHDSTSHHS. 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01402 395 MobiDBLite consensus disorder prediction 362 395 - -
Seca11g01402 395 ProSiteProfiles TCP domain profile. 82 136 IPR017887 -
Seca11g01402 395 MobiDBLite consensus disorder prediction 76 94 - -
Seca11g01402 395 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 30 386 IPR005333 GO:0003700
Seca11g01402 395 MobiDBLite consensus disorder prediction 18 32 - -
Seca11g01402 395 MobiDBLite consensus disorder prediction 241 255 - -
Seca11g01402 395 MobiDBLite consensus disorder prediction 338 353 - -
Seca11g01402 395 Pfam TCP family transcription factor 80 210 IPR017887 -
Seca11g01402 395 MobiDBLite consensus disorder prediction 214 261 - -
Seca11g01402 395 MobiDBLite consensus disorder prediction 381 395 - -
Seca11g01402 395 MobiDBLite consensus disorder prediction 338 357 - -
Seca11g01402 395 MobiDBLite consensus disorder prediction 33 67 - -
Seca11g01402 395 MobiDBLite consensus disorder prediction 366 380 - -
Seca11g01402 395 MobiDBLite consensus disorder prediction 1 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01402 Seca-Chr11 15153122 15154309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01402 73 338 TCP Transcription Factor Family AT3G47620 47.904 5.66e-62 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca11g01402 TCP 2.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01402 - - psat:127073804 513.457