Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01398 ATGGGGAGGCCACCTTGCTGTGACAAAATTGGGATTAAGAAAGGACCTTGGACTCCAGAAGAGGACATCATCTTGGTCTCTTACATTCAAGAACACGGACCAGGCAATTGGAGATCAGTTCCCACCAATACAGGTTTGATGAGATGCAGCAAAAGCTGCAGACTTAGATGGACAAACTATCTACGACCAGGTATCAAACGAGGTAATTTCAGTGATCATGAGGAGAGGATGATCATTCACCTCCAAGCTCTTTTGGGCAACAGATGGGCTGCTATAGCATCATATCTTCCACAGAGGACAGACAATGACATAAAAAATTATTGGAATACCCATTTGAAGAAGAAGCTAAACAAAAATCAAAGTGGAAGTGGTGATGAGGCCAGTGTTGACCAAGAGGGACATTCTTCTTCTTCATCTTCTTCACAGCCACCAAAAGGTCAATGGGAGAGAAGGCTACAAACAGATATCCAAATGGCCAAACAAGCCTTATCTGAGGCTTTGTCCCTTCAAAACCCACCACCACCTGATACCAAGCCCTCAATTTCTGAACATCATGCATCCACATACGCTTCAAGCTTCGAAAACATTTCAAAATTGCTTGAAAACTGGAAGAAATCCCCAAACTCATCATCAACAAATTCATCATATTCCTTCAACTGCAACAACAACATGGCCACTACTACAGGATCCAGTTCTAGTACTGAAGGAGCACAGAGCTGCAATACACAAGATCATCATCATCATGCTGCTGGTTTTGACTCCTTGTTGACCTTCAATAAGTCTGATCATTATGAGGCTCGATCTAGGTCGGTTGAAGAAAGGAAGCCAAATTTGGAGATGATGCAACAAGTTCCTCCTCTTACTCTTCTTGAAAAGTGGCTTTTTGATGATGGAGCAGCTGCTCAATGCCATGAAGATCTAATGAACATGTCACTGGAGGAAAGTACTGCTGGTTTGTTTTAG 963 0.4268 MGRPPCCDKIGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFSDHEERMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLNKNQSGSGDEASVDQEGHSSSSSSSQPPKGQWERRLQTDIQMAKQALSEALSLQNPPPPDTKPSISEHHASTYASSFENISKLLENWKKSPNSSSTNSSYSFNCNNNMATTTGSSSSTEGAQSCNTQDHHHHAAGFDSLLTFNKSDHYEARSRSVEERKPNLEMMQQVPPLTLLEKWLFDDGAAAQCHEDLMNMSLEESTAGLF. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01398 320 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca11g01398 320 FunFam MYB-related transcription factor 13 66 - -
Seca11g01398 320 CDD SANT 69 112 IPR001005 -
Seca11g01398 320 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 230 - -
Seca11g01398 320 MobiDBLite consensus disorder prediction 115 149 - -
Seca11g01398 320 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca11g01398 320 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca11g01398 320 CDD SANT 16 61 IPR001005 -
Seca11g01398 320 MobiDBLite consensus disorder prediction 115 148 - -
Seca11g01398 320 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca11g01398 320 SMART sant 66 114 IPR001005 -
Seca11g01398 320 SMART sant 13 63 IPR001005 -
Seca11g01398 320 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca11g01398 320 Gene3D - 68 142 - -
Seca11g01398 320 FunFam Transcription factor MYB30 68 126 - -
Seca11g01398 320 Gene3D - 13 66 - -
Seca11g01398 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca11g01398 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01398 Seca-Chr11 15029359 15031360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01398 1 320 MYB Transcription Factor Family AT5G62470 48.656 3.01e-102 302
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca11g01398 Myb_DNA-binding 9.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01398 K09422 - gmx:100799402 421.009