Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01393 ATGGATATTCATCCACTTAGGAGTTGGACCTCTTACTATGACATAGATGAAAATCCATTTCCATTTACATGCCATTTTTCTTTCAGTGGAAATGCTAGTGGTTATTCTGCATTGGATTGGCCAGAAGAATTTCCCATACAAGATAGCTATTTTGATCCTATCCCTCTTATGGAGTGCAATTACTTTGCTGATCCTTTGTATGAAACTCTAGCCATTGAGCCAACACCAAGATTGCAAGTTGTTGCAGACTATGATTTTTATGATGTGAAGAAGGGGTTTTCTCTATGGAACGAAATTGATGCTGGGTTTGATTCAGAAAAGAATGATTTTTTATATTGCAACAATGATGAAAGTAGTAAGGAAATGATTATGGAAGATGGGAAGGTTAATAGAGGCAGAGAAGAAAGGAGTGGCAGTACTAGAATGTTGTCAAGGAAGACCATATCTCAGTATTTCTATATGCCAATAACACAAGCAGCCAGAGAGCTTAATGTGGGGTTGACACTTTTGAAGAAAAGGTGCAGAGAGTTAGGGATTCGAAGGTGGCCCCACAGGAAGCTCATGAGCCTGCAAACACTCATAAATAATGTACAGGAGCTGGGGAAAGAGGAGGGGCCTGAGAGTGAAGAAAAGTTGAGGAATGCAATTGAGATATTGGAGAAGGAAAAGAAGCTTATGGAGGAAATGCCAGATATGCAATTGGAAGATCACACAAAAAGGCTTAGACAAGCGTGTTTTAAGGCTAACTATAAGAAGAGGAAGCTCATGGGGCAGATGGAACCACACTCTTCTTCTTCTTTCAGTGACACTGTTAGCTATGACTATTTTGAAACAAAGGGTGAATATAGTTTTTAG 855 0.3942 MDIHPLRSWTSYYDIDENPFPFTCHFSFSGNASGYSALDWPEEFPIQDSYFDPIPLMECNYFADPLYETLAIEPTPRLQVVADYDFYDVKKGFSLWNEIDAGFDSEKNDFLYCNNDESSKEMIMEDGKVNRGREERSGSTRMLSRKTISQYFYMPITQAARELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLINNVQELGKEEGPESEEKLRNAIEILEKEKKLMEEMPDMQLEDHTKRLRQACFKANYKKRKLMGQMEPHSSSSFSDTVSYDYFETKGEYSF. 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01393 284 PANTHER PROTEIN RKD4 126 265 IPR044607 GO:0003700
Seca11g01393 284 Pfam RWP-RK domain 143 190 IPR003035 -
Seca11g01393 284 Coils Coil 209 229 - -
Seca11g01393 284 ProSiteProfiles RWP-RK domain profile. 124 211 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01393 Seca-Chr11 14969878 14970988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01393 131 261 AtRKD Transcription Factor Family AT1G18790 68.657 1.24e-58 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Seca11g01393 RWP-RK 4.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01393 - - gmx:100788666 357.836