Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01387 ATGCACCAAACTACAGACCCTGCAATTAGGCTCTTCGGTCAGAAGATTCCTCTGCCCGCTGATCCTCACCTTCCCGCCGCCGCTTCTCACTCGCCGCCGGACATCCATCTCCACAAAGAAAAAGAAAAAGAAAAAGAAGACAGAGAAAGTGGTGATGAAACAGAACAAGAGCCACAACATGAGGATCTTCCAGGAGCTGAAAATGTAACAGAGGAAGATGAAGAAGCTGATCCTGATGATACCCCTTCCAATGCAGAAGAGGAGACTAAGAATTCAGGCATGTCTCCTGAGGCTATTGTGAACCCAAAAACACCTTCCATACAAGAAGAAACCTCAAAATCAAAAAGTGACAAGTCAGAGAAGGATCAAAGCAATGCAGGGAACTCACAAGAGAAAATCCTGAAGAAACCAGATAAAGTGTTACCATGTCCCCGCTGCAATAGCATGGACACTAAATTCTGTTACTATAACAACTACAACATCAACCAGCCACGTTATTTCTGCAAAGCTTGCCAGAGATATTGGACTGCTGGTGGCACCATGAGGAATGTTCCAGTAGGTGCAGGACGAAGAAAGAACAAGAACTCCACCTCACATTATCGCCACATCACTATCTCTGAGGCTCTTCAAGCAGCTAGAATTGATGCTCCTCCTAATGGAACTCATCTTCCTACATTGAAAACCAATGGTAGAGTCCTCAGCTTTGGATTAGATGCACCTATATGTGATTCCATGACATCTGTTCTCAATCTTGGTGAGAAAAAGGTTCTTAATGGCACAAGAAATGGGTTTCATGTTTCTTGCAAAAGTGGGGAAAATGGTGATGACTCATCAAATTCAAGTTCAACATCTTCTATTACTGTTTCAAGTTCCATGGGAGAAAGTAGCAAAAGTACTTTCCAACAACCAATGCTACAAAACAATGGTTTCATTCCTCAAGTTCCATGCATTCCTAGTGTTCCTTGGCCTTATACTTGGAACCCTCCAGTTCCTTCACCTGCTTTGTGTCCTTCAGGATTTCCCTTGCCATTCTATCCTGCTCCTGCTTTTTGGAACTGCAGTGTTCCATGGTTTCCCTCACATTCCCCTGCTTCAACACCAAAGTCTCCAAGCTCAGGTCCAAATTCTCCAACTTTGGGGAAGCACTCAAGGGAAGGTGAGGTGATTACACAGGAACCTTTGCAAAAGGAAGAACCATCACCAAAGCAAAGGAATGGCTGTGTTTTGGTTCCCAAAACATTAAGAATTGATGACCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACACTAGGAATAAAAAATGAATCAGCCAATGGGGGAGGTATGTTTAAGGCCTTCCAATCAACAAAAGAGGAAAAGAACCATGTAGAAGCTTCTCCAGTGTTGAGGGCTAACCCTGCAGCTTTGTCTAGATCCCTTAATTTTCATGAGAACTCCTAA 1443 0.4352 MHQTTDPAIRLFGQKIPLPADPHLPAAASHSPPDIHLHKEKEKEKEDRESGDETEQEPQHEDLPGAENVTEEDEEADPDDTPSNAEEETKNSGMSPEAIVNPKTPSIQEETSKSKSDKSEKDQSNAGNSQEKILKKPDKVLPCPRCNSMDTKFCYYNNYNINQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSTSHYRHITISEALQAARIDAPPNGTHLPTLKTNGRVLSFGLDAPICDSMTSVLNLGEKKVLNGTRNGFHVSCKSGENGDDSSNSSSTSSITVSSSMGESSKSTFQQPMLQNNGFIPQVPCIPSVPWPYTWNPPVPSPALCPSGFPLPFYPAPAFWNCSVPWFPSHSPASTPKSPSSGPNSPTLGKHSREGEVITQEPLQKEEPSPKQRNGCVLVPKTLRIDDPSEAAKSSIWATLGIKNESANGGGMFKAFQSTKEEKNHVEASPVLRANPAALSRSLNFHENS. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01387 480 PANTHER CYCLIC DOF FACTOR 2 4 480 IPR045174 GO:0003700|GO:0006355
Seca11g01387 480 MobiDBLite consensus disorder prediction 362 379 - -
Seca11g01387 480 ProSiteProfiles Zinc finger Dof-type profile. 141 195 IPR003851 GO:0003677|GO:0006355
Seca11g01387 480 MobiDBLite consensus disorder prediction 67 82 - -
Seca11g01387 480 MobiDBLite consensus disorder prediction 268 299 - -
Seca11g01387 480 MobiDBLite consensus disorder prediction 362 385 - -
Seca11g01387 480 Pfam Dof domain, zinc finger 138 195 IPR003851 GO:0003677|GO:0006355
Seca11g01387 480 ProSitePatterns Zinc finger Dof-type signature. 143 179 IPR003851 GO:0003677|GO:0006355
Seca11g01387 480 MobiDBLite consensus disorder prediction 110 125 - -
Seca11g01387 480 MobiDBLite consensus disorder prediction 33 66 - -
Seca11g01387 480 MobiDBLite consensus disorder prediction 1 136 - -
Seca11g01387 480 MobiDBLite consensus disorder prediction 87 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01387 Seca-Chr11 14886297 14888713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01387 1 478 C2C2-Dof Transcription Factor Family AT3G47500 47.273 4.08e-122 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca11g01387 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01387 - - gmx:778113 645.58