Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01385 ATGGTGGGTGCATGGAATGGAAGAGAGAGAGAGGTGTTTGTTGGTGGAGAAGATGTTTGTTACAAACGCTGCCAACAATTGGGGTCTCAGAAATCTCACCGTTCATTCTCAAAATTTGAGCTTGGCTGGTTCCCCAAACTCTTTCCACCGAAATCACAGCTACACCCATCGTCCTTCAACAATTTCTTAGCTCTTCGATATCATCTCTCTCTCTACTCTGCATGTTTTCCCTTTCACAAATATTGCTTCATATCTTCGCTCATTTCTTCACTTACCTCACACCCTCCTTTCTTTTCAATTTTTCCATTTCCTTCCCTCAATTCTTCTCTCTACACCGTCTTCAGTATCTCAACAAGGATGGGAAGAGTTAAACTGAAGATAAAAAAATTAGAGAGCACGAGCAACCGACATGTGACTTATTCGAAGCGGAAAAGTGGAATTTTGAAGAAAGCAAAGGAATTATCAATCCTATGTGATATAGATATTGTCCTTCTCATGTTTTCTCCAACAGGAAAGCCTACATTGCTGCAGGGAGAACGCAGCAATCTTGAGGAGGTCATTGCAAAATTTTCTCAACTTAGCCCACAAGAAAGGGCCAAAAGGAAAATGGAAAGCCTTGAAGCACTGAAGAAAACCTTCAAGAAGTTGGATCATGATGTAAAAATACAAGATTTCTTGGGTTCGAGCAGTCAAACTGTAGAGGAATTAACTCATCAAGTGAGGGTTTTACAAGCTCAACTCACAGAAGTACATCAGAGACTGAGCTATTGGAATAATCTGGAGAAGATCAATAACTTAGAACATCTTAGGCAAATGGAAGACTCACTCAAGGAATCAATCAATCGAGTGAATCTACAGAAGGATAATTTAAGAAAGCACCAACTAATTTCACTTGAATGCGCTAACCAGATGCAGGATGGGATGACTTTACCCTTGATGATGGCTGGTCTGCAAGAATCCCAACCCCTGTCTTGGCTTTTGAATAGTGATAATCATCAGTTGATGTTACCCAGTGAACCAAAATTTCTGCCATTTAGTGATAATACCAATAGAGATGCTGAGTGCTCCAATGACATTTCACTCCCAGGATATTCTGGTTATATTGGGAATACTAAACTTGAGGTTGGCAGCTCTCCTCAGGTCACTACTTTGGGTCAGGGAGCTGGTTCCTTGAACGAGATAAATGGAAATGCTTACTTAAATGTACAACATTGTGAGCAGTTTGCATACCCTCCTCCTCCAGATCTTGAGGAAGTAAAACATCACCAGACAATGAATAGTAAACCAAACACTGTGGATTACCAAGTTAACAATAGCTTTGATCTGCCCAGATCAATGTTTGAAAATGGGCATCAGTTCTGGAATTCTGCTTCTGGGTCTTGCGGGATTGCCATGTATAATGAAAATGGCTACCCTAGGGTAAGCAGTCATTTTTTGTTTCATTAG 1446 0.4059 MVGAWNGREREVFVGGEDVCYKRCQQLGSQKSHRSFSKFELGWFPKLFPPKSQLHPSSFNNFLALRYHLSLYSACFPFHKYCFISSLISSLTSHPPFFSIFPFPSLNSSLYTVFSISTRMGRVKLKIKKLESTSNRHVTYSKRKSGILKKAKELSILCDIDIVLLMFSPTGKPTLLQGERSNLEEVIAKFSQLSPQERAKRKMESLEALKKTFKKLDHDVKIQDFLGSSSQTVEELTHQVRVLQAQLTEVHQRLSYWNNLEKINNLEHLRQMEDSLKESINRVNLQKDNLRKHQLISLECANQMQDGMTLPLMMAGLQESQPLSWLLNSDNHQLMLPSEPKFLPFSDNTNRDAECSNDISLPGYSGYIGNTKLEVGSSPQVTTLGQGAGSLNEINGNAYLNVQHCEQFAYPPPPDLEEVKHHQTMNSKPNTVDYQVNNSFDLPRSMFENGHQFWNSASGSCGIAMYNENGYPRVSSHFLFH. 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01385 481 ProSiteProfiles MADS-box domain profile. 120 172 IPR002100 GO:0003677|GO:0046983
Seca11g01385 481 SMART madsneu2 120 179 IPR002100 GO:0003677|GO:0046983
Seca11g01385 481 PANTHER SERUM RESPONSE FACTOR HOMOLOG 122 319 - -
Seca11g01385 481 Coils Coil 196 216 - -
Seca11g01385 481 FunFam Agamous-like MADS-box protein AGL30 133 215 - -
Seca11g01385 481 SUPERFAMILY SRF-like 121 214 IPR036879 GO:0003677|GO:0046983
Seca11g01385 481 Gene3D - 133 215 IPR036879 GO:0003677|GO:0046983
Seca11g01385 481 Coils Coil 266 289 - -
Seca11g01385 481 CDD MADS_SRF_like 121 203 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca11g01385 481 PRINTS MADS domain signature 157 178 IPR002100 GO:0003677|GO:0046983
Seca11g01385 481 PRINTS MADS domain signature 142 157 IPR002100 GO:0003677|GO:0046983
Seca11g01385 481 PRINTS MADS domain signature 122 142 IPR002100 GO:0003677|GO:0046983
Seca11g01385 481 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 130 174 IPR002100 GO:0003677|GO:0046983
Seca11g01385 481 Coils Coil 233 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01385 Seca-Chr11 14857791 14862890 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01385 120 395 Type I MADS-box Gene Family AT2G03060 51.930 1.38e-88 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca11g01385 SRF-TF 1.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01385 - - pvu:PHAVU_003G189100g 714.531