Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01382 ATGGAAAACGTTTCTGTTTTATCTAAGGCAGAGGATAAGATGGATTTGCCTCCTGGATTTCGGTTTCACCCAACTGATGAAGAGCTTATAAGCCATTACCTGTACAAGAAGGTCATTGATACCAATTTCTCTGCCAGGGCCATTGGAGAAGTGGACCTTAACAAGTCTGAGCCTTGGGATTTGCCATGGAAAGCAAAAATGGGAGAAAAAGAGTGGTACTTTTTCTGTGTGAGAGACAGAAAATACCCAACAGGGTTGAGAACAAACAGAGCCACAGAAGCAGGGTATTGGAAGGCAACAGGGAAAGATAAGGAGATTTTCAGAGGAAAATCACTGGTTGGAATGAAGAAAACTCTTGTTTTCTACAAAGGGAGAGCACCCAAAGGAGAGAAAAGCAACTGGGTGATGCATGAATATAGACTTGAGGGTAAATTTTCAGTTCATAATCTACCAAAAACTGCAAAGAACGAATGGGTTATTTGCAGGGTGTTTCAGAAGAGTTTAGCTGGCAAGAAAACCCATATTTCTGGGATAATGAGGTTGGACTCAATAGGAAATGAATTGGGTCCTTCTGGTCTACCACCCCTCACAGATTCCTTGCCTTCCATTGCCAAAACCAAATCACTGATTGATTCGGCTTACGTGCCCTGCTTCTCCAATCCAATTGATGTTCAAAGAAACCACCAAGGAGGGGTCTTTGATTCCTTCACTAACTCCATATATGGGATTTCCTCAAATCCGTTAGATATTCTTCCAAGAATGACACCTTCTGGCTCACTATACTCCACTCATGGTGTTCAAGTTCAAGCTAATTTGCCATTTCCAGGTTCTGTTTACACTATGCAGGACCAGTCCATCCTAAGAGCCTTGTATGAGAACAATGGATCAAACTTGATAAATGGTTTCAAGACAGAGAGGGAAATGGTCAGTGTCTCACAGGAAACAGATTTAACCACTGATATGAATGTAGAAACCTCTTCAGTGGTATCAAATTTTGATATGGGTAGGAGCCACTTTGACAATCAGAATCATCCTCATGCTTCTGTTGCAGCAGTGGACCTTGATGGTTTGTGGAATTACTAA 1083 0.4174 MENVSVLSKAEDKMDLPPGFRFHPTDEELISHYLYKKVIDTNFSARAIGEVDLNKSEPWDLPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFRGKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLEGKFSVHNLPKTAKNEWVICRVFQKSLAGKKTHISGIMRLDSIGNELGPSGLPPLTDSLPSIAKTKSLIDSAYVPCFSNPIDVQRNHQGGVFDSFTNSIYGISSNPLDILPRMTPSGSLYSTHGVQVQANLPFPGSVYTMQDQSILRALYENNGSNLINGFKTEREMVSVSQETDLTTDMNVETSSVVSNFDMGRSHFDNQNHPHASVAAVDLDGLWNY. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01382 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 277 - -
Seca11g01382 360 SUPERFAMILY NAC domain 11 166 IPR036093 GO:0003677|GO:0006355
Seca11g01382 360 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Seca11g01382 360 Gene3D NAC domain 25 169 IPR036093 GO:0003677|GO:0006355
Seca11g01382 360 ProSiteProfiles NAC domain profile. 16 166 IPR003441 GO:0003677|GO:0006355
Seca11g01382 360 FunFam NAC domain-containing protein 100-like 25 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01382 Seca-Chr11 14811463 14813651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01382 14 360 NAC Transcription Factor Family AT5G07680 59.195 7.22e-138 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca11g01382 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01382 - - lja:Lj0g3v0155359.1 626.32