Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01362 ATGTCAGAACAGGAAACACATTCCTGTGTCTTCCTATTACTCTTCTTTTCCTTCATCCTTCTTTCAGGTAGAGTTGTTGTCGGGGATTCTTTGGACACTGACAAACAGGTTCTGCTGAAGCTGAAAAAGTACCTTGACAACAGAACTCTTGCAGACCAAGGAGGGTACATATATTGGAACACCAACAACTCCAATAATCCTTGTGAATGGCAAGGAATCTGGTGCAGCAAAGCAAGGAGGGTGGTTGGCATAGACCTCTCTGATAGTGACATCACAGGGGAGATATTCAATAACTTCTCACAACTCACTGAGCTAACACACCTTGATCTCTCTCAGAACACACTCTTTGGAGGGATTCCAGAGGATTTGAGGCGCTGCCAGAAGCTCTTGCATCTCAACCTTTCCCATAATATTCTTGATGGAGAGCTGAACGTGACTGGAATGACAAGTTTGCAAACACTGGACTTGTCAATGAATAGATTTCATGGGGAACTTGGGTTGAATTTCCCTGCCACTTGTGACAATTTAGTCACTTTGAATATCTCAGGTAATAACATGACTGGTACTATTGGTGACTCCTTTGATCAATGTCCCAAGTTGCAGTACTTGGATTTGAGCACCAACAATCTGAGTGGGGGCATATGGATGGGGTTTGCTAGGCTCAGAGAGTTTTCTGTTGCTGAGAACCATCTCATTGGGACCATTCCTTCTGAGGATTTTCCATGGAATTGTAGCCTTGAAGAACTAGACCTTTCTCAAAATGGGTTTGTTGGTGAGGCACCAAAGGAGGTTGCTAATTGCAAGAATTTAAGCATTCTGAATCTTTCTAGCAACAATTTTACTGGGGCTATTCCCATTGAAATTGGATCCATTTCAGGCCTCAGAGGATTGTACTTGGGGAGCAACAACTTTTCAAGAGATATTCCAGAGTCCCTTCTAAACTTGACCAATTTGGTTTTCTTGGATTTGAGCAGAAACAGATTTGGTAGGGACATACAAGAGATATTTGGGAAATTTAAGCAGGTGAGGTTTCTTCTATTGCACTCCAATTCTTACACTGGAGGATTGATATCATCAGGAATTCTCACATTGCCAAACATTGTGAGGTTAGACCTAAGCTTCAACAACTTTTCAGGTCCATTACCTGTTGAAATTTCCAAGATGTCAAGTCTGAAATTTTTAATGTTATCATATAACCAATTCAATGGATCTATTCCATCTGAATTTGGAAATATGACTCACCTGCAAGCACTTGACCTTGCCTTCAACAATTTGAGTGGACCAATACCACCAAGCCTTGGAAACTTGAGTTCCCTTTTATGGTTGATGCTTGCAGATAATTCATTAACTGGAAGAATCCCCCCAGAGTTGGGAAACTGTTCAAGCTTGTTATGGTTAAACCTTGCCAACAATAACCTCTCTGGAAATTTTCCTTCTGAATTGTCTACAATTGGAAGGAATGCCATGACCACATTTGAATCAAATAGGAAAGATGATGGAATGGTTGCTGGCTCTGGTGAATGTTTAGCAATGAAGAGATGGATACCTGCAGATTACCCTCCATTCAGCTTTGTGTATGGCATCTTAACAAGGAAAAATTGTAGAGGCCTTTGGGACAAGTTACTCAAAGGATATGGTATTTTCCCATTTTGCACACCCGGGTCCTCCTTTCGCTTACCCCTCATATCTGGGTATATTCAGTTAAGTGGGAACCAGCTAGGTGGTGAAATCCCTTTAGAGATAGGGAAAATGGTGAACTTCAGTATGTTTCACTTGGGGTTCAACAATTTCTCTGGGAAATTCCCTCCAGAGTTGGGAAGTATTCCACTTGTGGTCTTGAACATGACTAGAAACAAGTTTTCAGGTGAAATTCCACAGGAAATTGGCAACATGAAATGTATGCAGAATCTGGATTTGTCTTACAACAACTTCTCTGGGACTTTTCCTACAAGTTTGAACAACTTGGCTGAGCTTAACAAGTTCAACATCTCCTACAATCCCCTCATAGCTGGTGTAGTCCCATCAACAGGACAATTTGTTACTTTTGAGAAGGATTCATATTTAGGTGACCCCCTCTTAATCCTTCCCAAGTTCATTGACAACACCACAGATGATAAAAACACAACCTTTCACAAAGTCCAGAAAAACCCCACAAAATTGTCTGTGTTCTTGGTATTTGTAGCCATAACACTAGTTTTCATGGTATTTGGGCTTCTTACCATAATAGTCTGTGTATTGGTGAAAAGCCCCTCAGATGAACCAGGATACCTCTTGAAGGACACAAAAGAATGGCATGATTCCAGCAGCACCGGATCCTCACCATGGTTATCTGATACAGTTAAGGTTATCCGTTTGAACAAGACAGCTTTTACATATGCTGACATTTTGAAAGCAACCAGCAACTTCTCAGAGAACAGAATTATAGGAAAAGGTGGATTTGGAACAGTGTACAAGGGAGTGTTCCCAGATGGTAAAGAATTGGCAGTGAAGAAGCTCCAAAGGGAAGGACTTGAGGGTGAAAAGGAATTCAGAGCTGAAATGGAGGTTCTTAGTGGTCATGGGTTTGGTTGGCCTCATCCAAACCTGGTCACACTCTATGGTTGGTGCCTAAATGGTTCAGAGAAGATCCTTGTTTATGAGTACATAGAAGGTGGAAGCTTGGAGGATTTAGTGACAGATAGAACACGTTTGACATGGAGGAGAAGGCTACAAGTAGCAATTGATGTGGCTAGAGCATTAGTCTATTTACACCATGAATGCTACCCTTCTATTGTACACAGAGATGTGAAAGCTAGCAATGTTCTGTTAGACAAAGAAGGGAAGGCCAAAGTAACAGACTTTGGACTTGCTAGAGTGGTTGATGTTGGGGATAGCCATGTGAGCACAATGGTGGCTGGAACAGTGGGTTATGTTGCACCTGAATATGGACAAACATGGCAAGCAACTACAAAAGGAGATGTGTACAGTTTTGGGGTGTTGGTTATGGAGCTAGCAACAGGGAGACATGCAGTGGATGGAGGGGAAGAGTGTTTGGTTGAATGGGCTAGGCGTGTCATGGGTTATGGAAGACATCATGGGTTAAGCCGTTCTATACCAGTTTTGTTAATGGGTTCTGGACTTGTTGGTGGGGCTGAAGAGATGGGTGAGTTGCTATGGATTGGGGTGAGGTGCACTTCTGAAGTACCACATGCTAGGCCTAATATGAAGGAGGTTCTGGCTATGCTGATTAAGATATCTAACCCCAAAGGGGACTCAAGTTATGGACACCTTGTTTAG 3276 0.4222 MSEQETHSCVFLLLFFSFILLSGRVVVGDSLDTDKQVLLKLKKYLDNRTLADQGGYIYWNTNNSNNPCEWQGIWCSKARRVVGIDLSDSDITGEIFNNFSQLTELTHLDLSQNTLFGGIPEDLRRCQKLLHLNLSHNILDGELNVTGMTSLQTLDLSMNRFHGELGLNFPATCDNLVTLNISGNNMTGTIGDSFDQCPKLQYLDLSTNNLSGGIWMGFARLREFSVAENHLIGTIPSEDFPWNCSLEELDLSQNGFVGEAPKEVANCKNLSILNLSSNNFTGAIPIEIGSISGLRGLYLGSNNFSRDIPESLLNLTNLVFLDLSRNRFGRDIQEIFGKFKQVRFLLLHSNSYTGGLISSGILTLPNIVRLDLSFNNFSGPLPVEISKMSSLKFLMLSYNQFNGSIPSEFGNMTHLQALDLAFNNLSGPIPPSLGNLSSLLWLMLADNSLTGRIPPELGNCSSLLWLNLANNNLSGNFPSELSTIGRNAMTTFESNRKDDGMVAGSGECLAMKRWIPADYPPFSFVYGILTRKNCRGLWDKLLKGYGIFPFCTPGSSFRLPLISGYIQLSGNQLGGEIPLEIGKMVNFSMFHLGFNNFSGKFPPELGSIPLVVLNMTRNKFSGEIPQEIGNMKCMQNLDLSYNNFSGTFPTSLNNLAELNKFNISYNPLIAGVVPSTGQFVTFEKDSYLGDPLLILPKFIDNTTDDKNTTFHKVQKNPTKLSVFLVFVAITLVFMVFGLLTIIVCVLVKSPSDEPGYLLKDTKEWHDSSSTGSSPWLSDTVKVIRLNKTAFTYADILKATSNFSENRIIGKGGFGTVYKGVFPDGKELAVKKLQREGLEGEKEFRAEMEVLSGHGFGWPHPNLVTLYGWCLNGSEKILVYEYIEGGSLEDLVTDRTRLTWRRRLQVAIDVARALVYLHHECYPSIVHRDVKASNVLLDKEGKAKVTDFGLARVVDVGDSHVSTMVAGTVGYVAPEYGQTWQATTKGDVYSFGVLVMELATGRHAVDGGEECLVEWARRVMGYGRHHGLSRSIPVLLMGSGLVGGAEEMGELLWIGVRCTSEVPHARPNMKEVLAMLIKISNPKGDSSYGHLV. 1092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01362 1091 FunFam serine/threonine-protein kinase BRI1-like 2 761 881 - -
Seca11g01362 1091 Pfam Leucine rich repeat 365 425 IPR001611 GO:0005515
Seca11g01362 1091 Pfam Leucine rich repeat 269 328 IPR001611 GO:0005515
Seca11g01362 1091 Pfam Leucine rich repeat 150 210 IPR001611 GO:0005515
Seca11g01362 1091 CDD STKc_IRAK 808 1078 - -
Seca11g01362 1091 SUPERFAMILY L domain-like 565 670 - -
Seca11g01362 1091 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 244 1077 - -
Seca11g01362 1091 Gene3D Ribonuclease Inhibitor 561 711 IPR032675 -
Seca11g01362 1091 Gene3D Phosphorylase Kinase; domain 1 768 881 - -
Seca11g01362 1091 ProSitePatterns Protein kinases ATP-binding region signature. 808 831 IPR017441 GO:0005524
Seca11g01362 1091 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 240 332 - -
Seca11g01362 1091 SUPERFAMILY Protein kinase-like (PK-like) 784 1077 IPR011009 -
Seca11g01362 1091 Pfam Protein kinase domain 803 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01362 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 924 936 IPR008271 GO:0004672|GO:0006468
Seca11g01362 1091 Pfam Leucine rich repeat N-terminal domain 32 76 IPR013210 -
Seca11g01362 1091 Gene3D Transferase(Phosphotransferase) domain 1 882 1087 - -
Seca11g01362 1091 Gene3D Ribonuclease Inhibitor 30 169 IPR032675 -
Seca11g01362 1091 Gene3D Ribonuclease Inhibitor 170 239 IPR032675 -
Seca11g01362 1091 SUPERFAMILY L domain-like 219 480 - -
Seca11g01362 1091 SMART LRR_typ_2 436 460 IPR003591 -
Seca11g01362 1091 SMART LRR_typ_2 388 411 IPR003591 -
Seca11g01362 1091 SMART LRR_typ_2 102 126 IPR003591 -
Seca11g01362 1091 SMART LRR_typ_2 412 435 IPR003591 -
Seca11g01362 1091 SMART LRR_typ_2 315 338 IPR003591 -
Seca11g01362 1091 SUPERFAMILY L domain-like 74 286 - -
Seca11g01362 1091 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 587 673 - -
Seca11g01362 1091 ProSiteProfiles Protein kinase domain profile. 802 1078 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01362 1091 Gene3D Ribonuclease Inhibitor 240 334 IPR032675 -
Seca11g01362 1091 Gene3D Ribonuclease Inhibitor 335 496 IPR032675 -
Seca11g01362 1091 SMART serkin_6 802 1082 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca11g01362 1091 FunFam Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 882 1083 - -
Seca11g01362 1091 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 50 239 - -
Seca11g01362 1091 FunFam Putative LRR receptor-like serine/threonine-protein kinase 339 500 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01362 Seca-Chr11 14599658 14604106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01362 10 1075 Receptor kinase-like Gene Family AT1G55610 32.091 1.02e-152 484
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-2 Seca11g01362 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01362 - - gmx:100783886 1749.56