Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01345 ATGGAAGAAGATCAAGAATTCAAACACGTTTGCAAGTTCTGCAGCAAGAGCTTCCCTTGTGGTAGATCCTTGGGAGGTCACATGAGGTCTCACATCACAAACTTGTCATCATCTGAGACAGAAGAAAAACAAAAACAAAAACAAAAGCTTTCTTCTACAAAGAATAAGCCTTCTTCTGTCAACAATGGTGGAGGCTATACTATGGGTTCTGAAGCTGCAACTAATGTTGGCTATGGTCTAAGGGAGAATCCCAAGAAGACTTGGAGAATTTCTGATTCAAGTGAAGACAATTTGGTCTCTGACAAGTTCTGCAGAGAGTGTGGCAAAAAGTTTCCCTCTTGGAAAGCTTTGTTTGGGCACATGAAGTGTCACTCTGAGAAAGAAAGAGTTTCAAAGTCTAATAGCTTGGAGGATCAAGATTCTTGGACTTGGACTAATAATGCTAATGCTACACAGAAGCTGGTCATGGATAGCCAATCTGATAATGAAACCACTGCTCCAAATCGAAGAAGGAGATCAAAGAGAAGAACAAGGTACATGTTTGGTCCTGCTCCAACAACTTCTTCTGTGTCTTTTGCAAATCCTTCTTCTTCTTCTCTTTCTGAGGTTGAACAAGAGCAAGAAGAGGTTGCTATGAGTTTGATGATGCTTAGTAGAGATGTGAGTCCTTGGAGTGGTCTTCATTCTGTTGCTGAGTCTTCTGATAATAACTCAGTTTACTTTGAAGCTCGATCTTCAGTTCGAACTAATCTTCTTACTAAAATTGAAGGTAACAAGAAGCTTCCTCCTACCTCTAATATAGAAAACAAAAAGTGGGAGTTTGGCAATTCAGTTTCTGCAAATTTGAACTCCAAAGGGAAAAGTTCAGTGCTTTTGGCTACTCCTGAGGTTCCTGAAAATGAATTTAGGATTAACAAAGCTGGAGCTTCCATTAAGGGGTTCTTCAAGAATGATAAAGCTAACAAGTATGAGCTTGATTACTTCTCTGCATCAGAGGATTCTGAAGATGAACAGGGGAAGAACAGAGTCAATGGAACAGAATATGTTTTATCAAAATCAGCTAAGGGTACTAACAAGAACAGTTCAATCAAGACAAAGTTTTTGGATTCTGAATTGAAGTCAAATTCTCTTAAGAATTGGGTGAACAAGTCTTCAGAAGCTGAATTCAGCAAGAGCTCTAATAAGAGAGGCAAGTTTGAATGTACTACTTGCAACAAAATCTTCCACTCATATCAAGCTCTTGGAGGTCATAGAGCAAGTCATAAGAAGATCAAAGGATGCTTTGCTTCAAGAAATGAGAGCAGTGAAAACAGCATTGAAACTGAACTCTCTCCTGACCCAACAACTGAAAGCAAGCTCATGAAGAACAGTGAAAGTGAATATGTTGTTGAACATGAAATGGGTGGTGGTTTTCATAATGAGGCAGAGACAGTTACAGAGTCCAAGAAGAGCAAAGTGCATGAGTGCCCAATTTGTCTTAAGGTTTTTCCATCTGGACAAGCATTGGGTGGCCATAAGAGATCTCATTTGGCTGGTGGGTCAGAGAGTAGAAACTTTCAAACAGTTGTGCTTCAGGAACAAGTGCCAGAAATTAGGGACTTCCTTGATCTTAATCTTCCTGCTGCTACTACTGAGGAGGAAAGTAATACTAATAGCCATGCTGACTCTAACAGACCCTGGTGGGTAGTAGAAGGAAACCACAAACAAGAGGCACTGATAGGCTTGACTTGA 1731 0.4009 MEEDQEFKHVCKFCSKSFPCGRSLGGHMRSHITNLSSSETEEKQKQKQKLSSTKNKPSSVNNGGGYTMGSEAATNVGYGLRENPKKTWRISDSSEDNLVSDKFCRECGKKFPSWKALFGHMKCHSEKERVSKSNSLEDQDSWTWTNNANATQKLVMDSQSDNETTAPNRRRRSKRRTRYMFGPAPTTSSVSFANPSSSSLSEVEQEQEEVAMSLMMLSRDVSPWSGLHSVAESSDNNSVYFEARSSVRTNLLTKIEGNKKLPPTSNIENKKWEFGNSVSANLNSKGKSSVLLATPEVPENEFRINKAGASIKGFFKNDKANKYELDYFSASEDSEDEQGKNRVNGTEYVLSKSAKGTNKNSSIKTKFLDSELKSNSLKNWVNKSSEAEFSKSSNKRGKFECTTCNKIFHSYQALGGHRASHKKIKGCFASRNESSENSIETELSPDPTTESKLMKNSESEYVVEHEMGGGFHNEAETVTESKKSKVHECPICLKVFPSGQALGGHKRSHLAGGSESRNFQTVVLQEQVPEIRDFLDLNLPAATTEEESNTNSHADSNRPWWVVEGNHKQEALIGLT. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01345 576 MobiDBLite consensus disorder prediction 157 200 - -
Seca11g01345 576 SUPERFAMILY beta-beta-alpha zinc fingers 9 124 IPR036236 -
Seca11g01345 576 ProSiteProfiles Zinc finger C2H2 type domain profile. 487 509 IPR013087 -
Seca11g01345 576 SUPERFAMILY beta-beta-alpha zinc fingers 399 509 IPR036236 -
Seca11g01345 576 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Seca11g01345 576 Pfam C2H2-type zinc finger 9 31 - -
Seca11g01345 576 Pfam C2H2-type zinc finger 486 511 - -
Seca11g01345 576 Pfam C2H2-type zinc finger 399 423 - -
Seca11g01345 576 Pfam C2H2-type zinc finger 104 126 - -
Seca11g01345 576 ProSitePatterns Zinc finger C2H2 type domain signature. 489 509 IPR013087 -
Seca11g01345 576 SMART c2h2final6 9 31 IPR013087 -
Seca11g01345 576 SMART c2h2final6 102 124 IPR013087 -
Seca11g01345 576 SMART c2h2final6 399 421 IPR013087 -
Seca11g01345 576 SMART c2h2final6 487 509 IPR013087 -
Seca11g01345 576 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Seca11g01345 576 ProSiteProfiles Zinc finger C2H2 type domain profile. 399 426 IPR013087 -
Seca11g01345 576 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 561 - -
Seca11g01345 576 ProSitePatterns Zinc finger C2H2 type domain signature. 401 421 IPR013087 -
Seca11g01345 576 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 31 IPR013087 -
Seca11g01345 576 MobiDBLite consensus disorder prediction 51 69 - -
Seca11g01345 576 Gene3D Classic Zinc Finger 396 509 - -
Seca11g01345 576 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Seca11g01345 576 MobiDBLite consensus disorder prediction 27 70 - -
Seca11g01345 576 MobiDBLite consensus disorder prediction 182 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01345 Seca-Chr11 14423207 14424937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01345 422 545 C2H2 Transcription Factor Family AT1G26610 42.308 2.65e-17 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g01345 zf-C2H2_6 8.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01345 - - gmx:102669916 729.939