Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01333 ATGGCATCATCAGCAAAGCGATGCCATTACGAAGTGCTGGGTCTTCCCCGAGACTGCACCCCCGACGAGATCCGATCAGCTTACCGCCGTCTCGCCCTTCAGCGCCACCCTGACAAGCTCGTCCAATCCGGTATCTCCCAATCCGAAGCCACCGCTCAGTTTCAGGAGCTGCAACAGGCCTACGAGGTCCTCTCCGACCCTAAGGAGCGTTCTTGGTACGACTCTCACCGTTCCCAAATCCTCTTCTCCGATCCCGATTCCCTCGGCAAAAACTCCGTCGTCCCCGACCTCTTCTCCTTCTTCTCCAACACCGTCTATTCCGGCTACTCCGATTCCGGCAGGGGTTTCTACAAGGTCTATTCCGATGTCTTTGACAAAATTCACGCCAACGAGATCAATTTCGCCAAGAAAATGGGGATTGGTGTTGATGCTGTTCGACAAGCCCCTGTTATGGGAAACTTGGATAGCCCCTATGAGCAGGTGACGGCGTTTTACGGTTATTGGTTAGGGTTTTCGACGGTGATGGATTTTTGCTGGGCGGATGAGTACGATGTGATGGCCGGTCCGAACCGGAAGTCACGGCGGTTGATGGAGGAAGAGAACAATAAGGTGAGGAGAAAGGCGAGGAAGGAGTATAATGAGACTGTGAGGAAGTTGGCTGATTTTGTGAAGAAGAGGGATAAGAGGGTGATTGATATGAAGGTGAAGAAGAATATGGAGATGGAGAAGAAGAAAGAGGAGGAGAAGGAGAGGAAGAGGAGGTTGGAGAAGGAGAGAAAGCAAAGGGCTATGGCTTATGAGGAGCCTGATTGGGCTAAGGTTGAGGAGGTTGAGGAGGAGGTGGAGGATTGGATTGAGGAGTTGGAGGAGAAGAAGGATGAGAAGGAGTTTTATTGTGTGCTTTGTGGGAAGAAGTTTAAGAGTGAGAAGCAATGGAAGAACCATGAGCAGTCCAAAAAGCATAAGGAGAAAGTTGCAGAGTTCAGGGATTCACTTGGTGATGAAGAGGAAGAGGATTTAGAAGCAGAGGTGGAAGAAGAAAAAGAAGAAGGAACAAGAAAGGAGGGATTGGAAAGTGAGGAAGATGGAATTGAGGGGGGTAGTGATCATTTAAGGGAGGCTGATTATGGGGTTGATGATTTGGATGGGAGGTTTAGAGATGGTCTCAATGTTGCAGAAGGGGAGGATAGAAATGGGGATGAAGTGGATGGTGATGGTGATGATTTTTTTGATGCACCACATGCAGATGGTGAGGAAGTTGATGTGTCAGTTGATTTTGATGATGAAAATGGTTTTCTTGAAGCAATGGTAGCTGGGCACAAGAACAGAAAACCCAGTACTTCAACACATAAGCCCAAAGCTTCAGTAACTCCAACTCAAATTGAGCATGAGAACGATGAGGTTAACCCAATGGACTATAACAACCGGAAGAGCTCAAGAAAGAAACGAGGAGCCAAGAAAGAGAAGGGTAGGAGAAATTGGGAAGAATCTAATGAGGCTGCTGCCAATGGCGATTGTGAGAATATGAACAGCAATAGAAATGATAATTCTTTTGCAGAAGAGTCTAGTTCCCAACATTTTGTCGAAAATGAGGATAATGGTAAAGAGAATGAGCAAGTGGATAGAGATAACAAGTGTTCAAATCAACCGGCTGATAAAAAAGGAAATCCAAAGGAAACAAAAACCAAAGCAAAAATTTCATCCAAAGGAAGAAAAGGAAAGGTGGCATCAAATAATCTTGGCAATACTTGCGGGACATGTGGAGAGGAGTTTGAGTCAAGGAATAAATTACATAAGCATCTGGGCGATTCTGGGCATGCGAAAATAAAAGGTCGATAA 1839 0.4622 MASSAKRCHYEVLGLPRDCTPDEIRSAYRRLALQRHPDKLVQSGISQSEATAQFQELQQAYEVLSDPKERSWYDSHRSQILFSDPDSLGKNSVVPDLFSFFSNTVYSGYSDSGRGFYKVYSDVFDKIHANEINFAKKMGIGVDAVRQAPVMGNLDSPYEQVTAFYGYWLGFSTVMDFCWADEYDVMAGPNRKSRRLMEEENNKVRRKARKEYNETVRKLADFVKKRDKRVIDMKVKKNMEMEKKKEEEKERKRRLEKERKQRAMAYEEPDWAKVEEVEEEVEDWIEELEEKKDEKEFYCVLCGKKFKSEKQWKNHEQSKKHKEKVAEFRDSLGDEEEEDLEAEVEEEKEEGTRKEGLESEEDGIEGGSDHLREADYGVDDLDGRFRDGLNVAEGEDRNGDEVDGDGDDFFDAPHADGEEVDVSVDFDDENGFLEAMVAGHKNRKPSTSTHKPKASVTPTQIEHENDEVNPMDYNNRKSSRKKRGAKKEKGRRNWEESNEAAANGDCENMNSNRNDNSFAEESSSQHFVENEDNGKENEQVDRDNKCSNQPADKKGNPKETKTKAKISSKGRKGKVASNNLGNTCGTCGEEFESRNKLHKHLGDSGHAKIKGR. 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01333 612 Coils Coil 274 294 - -
Seca11g01333 612 MobiDBLite consensus disorder prediction 309 585 - -
Seca11g01333 612 Coils Coil 194 214 - -
Seca11g01333 612 ProSitePatterns Zinc finger C2H2 type domain signature. 584 606 IPR013087 -
Seca11g01333 612 PANTHER DNAJ PROTEIN JJJ1 HOMOLOG 1 612 IPR044648 -
Seca11g01333 612 ProSiteProfiles Zinc finger C2H2 type domain profile. 582 611 IPR013087 -
Seca11g01333 612 MobiDBLite consensus disorder prediction 503 524 - -
Seca11g01333 612 ProSitePatterns Nt-dnaJ domain signature. 54 73 IPR018253 -
Seca11g01333 612 SUPERFAMILY beta-beta-alpha zinc fingers 289 339 IPR036236 -
Seca11g01333 612 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Seca11g01333 612 MobiDBLite consensus disorder prediction 525 566 - -
Seca11g01333 612 ProSiteProfiles Zinc finger C2H2 type domain profile. 297 326 IPR013087 -
Seca11g01333 612 SMART ZnF_U1_5 294 328 IPR003604 GO:0003676|GO:0008270
Seca11g01333 612 MobiDBLite consensus disorder prediction 449 464 - -
Seca11g01333 612 Coils Coil 318 338 - -
Seca11g01333 612 SMART dnaj_3 7 69 IPR001623 -
Seca11g01333 612 MobiDBLite consensus disorder prediction 332 346 - -
Seca11g01333 612 MobiDBLite consensus disorder prediction 309 331 - -
Seca11g01333 612 SUPERFAMILY Chaperone J-domain 5 78 IPR036869 -
Seca11g01333 612 Gene3D Classic Zinc Finger 286 349 - -
Seca11g01333 612 ProSiteProfiles dnaJ domain profile. 8 77 IPR001623 -
Seca11g01333 612 SMART c2h2final6 297 321 IPR013087 -
Seca11g01333 612 SMART c2h2final6 582 606 IPR013087 -
Seca11g01333 612 CDD DnaJ 8 66 IPR001623 -
Seca11g01333 612 MobiDBLite consensus disorder prediction 347 397 - -
Seca11g01333 612 Pfam Zinc-finger double-stranded RNA-binding 297 322 IPR022755 -
Seca11g01333 612 PRINTS DnaJ domain signature 28 43 IPR001623 -
Seca11g01333 612 PRINTS DnaJ domain signature 49 69 IPR001623 -
Seca11g01333 612 PRINTS DnaJ domain signature 10 28 IPR001623 -
Seca11g01333 612 MobiDBLite consensus disorder prediction 240 261 - -
Seca11g01333 612 Coils Coil 231 265 - -
Seca11g01333 612 Pfam DnaJ domain 9 74 IPR001623 -
Seca11g01333 612 Gene3D DnaJ domain 1 87 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01333 Seca-Chr11 14188545 14191097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01333 1 612 C2H2 Transcription Factor Family AT1G74250 48.714 2.27e-173 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca11g01333 DnaJ 4.3e-22 CL0392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01333 K09506 - gmx:100788305 806.979