Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01329 ATGGCTTTCTTTGGTAGACTTGGGAATATACTAAGACATGCAGCAAACAGGCAAATTGGTTCAGAATTGCGTTCATCTCCATCTGTTTTCCAGGCTATACGATGCATGTCATCTGCTCCAAACTCAAAGCTGTTTATCGGAGGTGTTTCATATTCTACTGATGAGCAAAGTTTGAGGGAAGCTTTTTCAAAATATGGTGAAGTTGTTGATGCAAGGATTATTATGGATCGTGAAACTGGTAGATCCAGAGGATTTGGCTTTGTTACTTACAGTTCAGTTGAGGAGGCATCAAGTGCCATTCAGGCCTTGGATGGTCAGGACCTTCAAGGTCGCCAGATTAGGGTAAATTATGCTAATGAAAGGCCTCGTGGATATGGTGGCGGTGGTGGTTTTGGTGGTTCTTATGGCAACGCACCGTATGGTGCTGGAGCTGGAGCTGGCTATGGAGGTGCTTATGGTAGCTCTCCATATGGAGGTGCTTCAAGTGGTGGTGGCTATGGTGGAAATGTTGGTGGTGGTTATGGTGGTGGTGGATATGGTGGAGGCAGCTATGGATCAGGTGGCAGTTATGGGGGCAGTGGCTCTGGCGATAACTATTCTGCTCCTGACAGTTTTGGAACTGGTGTAAGCAGTGGAGGCTATGGTGGTAACACTGGGAGTTTTGGTGATGCTGGCGGTGTAAGCAATCATGAAAGCTCTGCTAGTTTCCCTGGCAGTGATAGTTATGCCAGTGCTGGTGATGGTGGTGGCAGCCATGGTTTTGCCAGTAGTGGATATGAAGGAAGTGCTGTTGATGGCAGTGGTCAATTGGATGGCAAAGACAACATCAATGTAAATGAGGAAGCAGGTGGTTTTGGGCACTCTTTGGAAGGAAATTACAGGGATGACGATGATGATGCTGGTAATTTTGCCAAAAGGGCTTGA 924 0.4686 MAFFGRLGNILRHAANRQIGSELRSSPSVFQAIRCMSSAPNSKLFIGGVSYSTDEQSLREAFSKYGEVVDARIIMDRETGRSRGFGFVTYSSVEEASSAIQALDGQDLQGRQIRVNYANERPRGYGGGGGFGGSYGNAPYGAGAGAGYGGAYGSSPYGGASSGGGYGGNVGGGYGGGGYGGGSYGSGGSYGGSGSGDNYSAPDSFGTGVSSGGYGGNTGSFGDAGGVSNHESSASFPGSDSYASAGDGGGSHGFASSGYEGSAVDGSGQLDGKDNINVNEEAGGFGHSLEGNYRDDDDDAGNFAKRA. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01329 307 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 21 215 - -
Seca11g01329 307 MobiDBLite consensus disorder prediction 222 307 - -
Seca11g01329 307 PRINTS Eggshell protein signature 38 54 - -
Seca11g01329 307 PRINTS Eggshell protein signature 208 226 - -
Seca11g01329 307 PRINTS Eggshell protein signature 184 194 - -
Seca11g01329 307 PRINTS Eggshell protein signature 156 171 - -
Seca11g01329 307 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 114 IPR000504 GO:0003723
Seca11g01329 307 SUPERFAMILY RNA-binding domain, RBD 38 150 IPR035979 GO:0003676
Seca11g01329 307 MobiDBLite consensus disorder prediction 222 240 - -
Seca11g01329 307 SMART rrm1_1 43 116 IPR000504 GO:0003723
Seca11g01329 307 Gene3D - 16 137 IPR012677 -
Seca11g01329 307 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 120 IPR000504 GO:0003723
Seca11g01329 307 MobiDBLite consensus disorder prediction 290 307 - -
Seca11g01329 307 CDD RRM2_NsCP33_like 43 118 - -
Seca11g01329 307 FunFam Glycine-rich RNA-binding protein 3, mitochondrial 12 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01329 Seca-Chr11 14160436 14163749 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01329 40 159 Eukaryotic Initiation Factors Gene Family AT3G16380 36.434 8.14e-12 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01329 K12741 - gmx:100799124 216.468