Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01325 ATGCGAAAAGCCGCGAACTGTAACATTTCAAAGACAATTTCCCGCTACCACCCACACTTACAAAAACAAACTCTCTCCCTCTTCTTCAAAAACGATCTATTCCCTCCTCAAACCCTAACACTTCTTCTTCCAATGGCGAAATCGGTCAGTCCAGACGCTATTTCCACTTTGCTAGCCAACCCCTCGCCTGAATTTTCATCAGATCTTCTCGAAATCGTCGTCCAAGTTCTCGATCTCAAGCAAAGCGGCAACAGATACATGTTCACTGCTAGTGATGGAAAGATGAAGCTGAGGGCTATTCTTCCTTCGAATATGTACTCTGAGGTGCTCTCTGGGAATATTCAGAACCTGGGCCTGATTCGTATCCTTGATTACACTCTCAACGATATCCCCAATAAGTCTGAGAAATATCTTATTGTCACAAAGTGTGAGTCGGTTTCTCCTGCGCTTCAAACGGAGATAAAGAACGAGCAAAGTGGAATTGTTTTGAAGCCCAAGGAAGAGGTTGCAGTGAAGAGTGAAGGTGCTGCCGGTATTGTTTTGAAGCCGAAGCAGGAAGTGGTGGCAAAATCTGCTGCTCAGATTGTGCATGAGCAACATGGAAATGCGGCTCCTGCTGCACGAATGGCCATGACGCGCAGGGTGCGTCCTCTTGTTTCCTTGAATCCTTATCAGGGTAATTGGACAATAAAGGTTAGTGTTACCAGCAAAGGGAGCATGCGTACCTATAAGAATGCCAGAGGGGAAGGTTGCGTCTTCAATGTGGAGTTGACAGATGAAGATGGTACTCAGATTCAAGCTACCATGTTTAATGATGCTGCGAGGAAGTTTTATGACAAATTTGTTCTGGGGAAGGTTTACTACATTTCAAGGGGGACTTTGAAAGTTGCTAACAAACAGTTCAAAACTGTGCAAAATGACTATGAAATGACACTAAATGAGAATTCTGAGGTGGAAGAGGTGGCCAATGAAGCGAGTTTTGTTCCAGAAACAAAATTCAACTTTGTCCCGATTGATCAGCTGGGTCCTCATGTCAATAAGACTGACCTTGTCGATGTCATTGGAGTTGTTCAGAATGTGTCTTCAACAATGAGTATTCGAAGGAAGAGTAACAATGAGAGTATTCCTAAGCGTGACATTACAATTGCTGATGAAACGAAGAAGACAGTGGTTGTGTCCCTGTGGAATGAGCTTGCAACTAACATAGGACAAGAGTTATTGGACATTGCTGATAAGTCTCCAGTAGTTGCAATCAAATCCCTCAGGGTTGGGGACTTTCAAGGTGTTTCTTTGTCAGCTATAAGCAAAAGTGCAGTTCTGATTAATCCAGACATACCTGAAGCGAAGAAACTCAGAAGCTGGTATGATGTTGAAGGTAAGGATGCTGCAATGGCTTCTGTAGGATCTGGCTCAAGTCAATCATCCAACAATGCTAGCAGATCAGTGTATTCTGATCGCGTTTCAATTTCTCACATAACCAGTAACCCATCCTTGGGGAATGACAAGCCTGCGTTTTTCAGTATTAGAGGATATATAAGTTCCATAAAGCCGGACCAGGCTATGTGGTATCGTGCCTGTAAGACTTGCAATAAGAAAGTTACTGAAAGTGTTGGTGCTGGGTATTGGTGTGAAGGTTGCCAGAAAAATGATGATCAGTGCAACTTAAGGTATATTATGGTTGTAAGAGTTTCTGATGCCAGTGGCGAGTCTCTTGTCTCAGTCTTTAATGAGGAAGCTGAGAAGATCGTTGGGTGCTCTGCTGATGAGCTAGATAACCTTAGATCACAGGATGGTGAAGATAATCCTTATCAACAAAAATTGAAGCAAGCTACTTGGGTTCCACATCTTCTCCGGGTTAGTGTTACTCAGAATGAGTACAATAATGAGAAGCGGCAAAGGATAACAGCCAGGGCGGTTGTTCCTGTTGATTTTGCTGCAGAATCAAGAATTCTCCTGGAAGATATATCAAAGATGAGAGTTTTGCAATAA 1989 0.4314 MRKAANCNISKTISRYHPHLQKQTLSLFFKNDLFPPQTLTLLLPMAKSVSPDAISTLLANPSPEFSSDLLEIVVQVLDLKQSGNRYMFTASDGKMKLRAILPSNMYSEVLSGNIQNLGLIRILDYTLNDIPNKSEKYLIVTKCESVSPALQTEIKNEQSGIVLKPKEEVAVKSEGAAGIVLKPKQEVVAKSAAQIVHEQHGNAAPAARMAMTRRVRPLVSLNPYQGNWTIKVSVTSKGSMRTYKNARGEGCVFNVELTDEDGTQIQATMFNDAARKFYDKFVLGKVYYISRGTLKVANKQFKTVQNDYEMTLNENSEVEEVANEASFVPETKFNFVPIDQLGPHVNKTDLVDVIGVVQNVSSTMSIRRKSNNESIPKRDITIADETKKTVVVSLWNELATNIGQELLDIADKSPVVAIKSLRVGDFQGVSLSAISKSAVLINPDIPEAKKLRSWYDVEGKDAAMASVGSGSSQSSNNASRSVYSDRVSISHITSNPSLGNDKPAFFSIRGYISSIKPDQAMWYRACKTCNKKVTESVGAGYWCEGCQKNDDQCNLRYIMVVRVSDASGESLVSVFNEEAEKIVGCSADELDNLRSQDGEDNPYQQKLKQATWVPHLLRVSVTQNEYNNEKRQRITARAVVPVDFAAESRILLEDISKMRVLQ. 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01325 662 CDD RPA1_DBD_C 491 657 IPR047192 -
Seca11g01325 662 Gene3D - 214 323 IPR012340 -
Seca11g01325 662 Pfam Replication protein A OB domain 344 442 IPR031657 -
Seca11g01325 662 Gene3D - 48 159 IPR012340 -
Seca11g01325 662 FunFam Replication protein A subunit 48 158 - -
Seca11g01325 662 Pfam OB-fold nucleic acid binding domain 228 314 IPR004365 GO:0003676
Seca11g01325 662 NCBIfam replication factor-a protein 1 (rpa1) 48 657 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca11g01325 662 SUPERFAMILY Nucleic acid-binding proteins 484 658 IPR012340 -
Seca11g01325 662 CDD RPA1_DBD_A 217 320 - -
Seca11g01325 662 Gene3D - 328 467 IPR012340 -
Seca11g01325 662 FunFam Replication protein A subunit 327 466 - -
Seca11g01325 662 Pfam Replication factor-A C terminal domain 505 650 IPR013955 -
Seca11g01325 662 SUPERFAMILY Nucleic acid-binding proteins 216 324 IPR012340 -
Seca11g01325 662 SUPERFAMILY Nucleic acid-binding proteins 45 149 IPR012340 -
Seca11g01325 662 Pfam Replication factor-A protein 1, N-terminal domain 49 147 IPR007199 GO:0003677|GO:0005634|GO:0006260
Seca11g01325 662 SUPERFAMILY Nucleic acid-binding proteins 333 460 IPR012340 -
Seca11g01325 662 CDD RPA1_DBD_B 350 456 - -
Seca11g01325 662 FunFam Replication protein A subunit 471 658 - -
Seca11g01325 662 Gene3D - 468 658 IPR012340 -
Seca11g01325 662 PANTHER REPLICATION FACTOR A 1, RFA1 228 621 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Seca11g01325 662 FunFam Replication protein A subunit 214 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01325 Seca-Chr11 14144138 14148034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01325 45 662 Core DNA Replication Machinery Family AT5G08020 69.790 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01325 K07466 - qsu:112017680 974.926