Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01316 ATGACTGTAAATTCAAGTAAAGGTTATCAAGAAAAGCGAGAGGGTGATGGCATTAAAATTAAGAACTTCTCTAAGGCACCCTCTACCTCAAGACAATGGTCATTATACAGAAATCCAAGGATTGTGAGAGTGTCACGTTCCATGGGAAGAAAAGACAGGCACAGCAAGGTCTGCACCATTAATGGACTGAAGGACCGTCGCATTAGGTTGTCTGTACCCACAGCAGTTGAGTTATATGATCTTCAAGACAAGCTTGGACTCAATCAACCTAGCAAGGTGGTAGATTGGTTACTTGAAGTCACCAAATATGAGATTGATAAGCTTCCACCACTTCAAATCCCTCAATGTTTTACTCAGTTTCATCAACAAACCCTATTGCCTCATCATCATGAAGCAGGTACCTCTAAGCTTTCTCTTGGAGGCTTACATGATGTTAGTTCCATATCTATAAAGGATGCAGTAAATCAAAACCTCATGGCAAAGTCAAGGTATTGGGATATAGTTATAAAGGATGTAGGAAATCAAAACCTTATGGCAAAGTCTAGGTATTGGGATATAGCTTCAGTGTCAAAACTAAAAGGTAAGGAAGCTGAGAGTGACTCCATCTCAGAGAAAGGAAAGTGCTGGATAAAAGCAAATGAACAAGAAAATCAAGGTTCAGCTCATAAGCTCTTCCCATTTGGGACTAATAGCCCTTCTTTATGTGGATTGTTAAACAATTCCATGACATATAACCCCTATCAGACTTCAAGTCTATCTTTATCCCAATTTGGAAGGCATGGATTATTTACTAACCAGGTAGATTCTCATCCCAGCAGTGCCAGTGCCAGTGCCAGTGCCGTGCAATTTTCATCTTCTGTGTCTGTACCATCTAATTCTCAGTTACTTTTTTATCCATCTTCTGCTATGTCATCACTTTTTACCCCGCACACTCCATTTATGGTCAACTCAATTGAAAGTTCTCAAGTTATGCCTCATCCTCTCATTCCATCTCTTCATCCAATCAATTCACCTTTTAGACTCATCCCAACACCATTTAGTTCCAAGACTCTTGCTTCAGTTAATAACAACAATCCCAACTAG 1083 0.398 MTVNSSKGYQEKREGDGIKIKNFSKAPSTSRQWSLYRNPRIVRVSRSMGRKDRHSKVCTINGLKDRRIRLSVPTAVELYDLQDKLGLNQPSKVVDWLLEVTKYEIDKLPPLQIPQCFTQFHQQTLLPHHHEAGTSKLSLGGLHDVSSISIKDAVNQNLMAKSRYWDIVIKDVGNQNLMAKSRYWDIASVSKLKGKEAESDSISEKGKCWIKANEQENQGSAHKLFPFGTNSPSLCGLLNNSMTYNPYQTSSLSLSQFGRHGLFTNQVDSHPSSASASASAVQFSSSVSVPSNSQLLFYPSSAMSSLFTPHTPFMVNSIESSQVMPHPLIPSLHPINSPFRLIPTPFSSKTLASVNNNNPN. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01316 360 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 306 IPR005333 GO:0003700
Seca11g01316 360 Pfam TCP family transcription factor 49 159 IPR017887 -
Seca11g01316 360 ProSiteProfiles TCP domain profile. 50 108 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01316 Seca-Chr11 14052853 14053956 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01316 34 314 TCP Transcription Factor Family AT5G60970 36.333 3.28e-42 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca11g01316 TCP 5.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01316 - - pvu:PHAVU_003G183700g 325.094