Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01312 ATGACTGAAAATTCAAGCAAAGGTTGTCAAGAAAAGCAAGAGGGTGATGGCATTAAAATTAAGAACTTCTCTAAGTCACCCTCTACCTCAAGACAATGGTCATTGTACAGAAATCCAAGGATTGTGAGAGTGTCACGTTCCATGGGAGGAAAAGACAGGCACAGCAAGGTCTGCACCATTAGTGGACTGAAGGACTGTTACATTAGGTTGTCTGGACCCACAGCAGTTGAGTTATATGATCTTCAAGACAAGCTTGGACTCAGTCAACCTAGCAAGGTGGTAGATTGGTTACTTGAAGTCACCAAATATGAGATTGATAAGCTTCCATCACATCAAATCCCTCCATGTTACTCAATTTCATCAACAAACCCTATTGCCTCATCATCATGA 390 0.4154 MTENSSKGCQEKQEGDGIKIKNFSKSPSTSRQWSLYRNPRIVRVSRSMGGKDRHSKVCTISGLKDCYIRLSGPTAVELYDLQDKLGLSQPSKVVDWLLEVTKYEIDKLPSHQIPPCYSISSTNPIASSS. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01312 129 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 122 IPR005333 GO:0003700
Seca11g01312 129 ProSiteProfiles TCP domain profile. 50 108 IPR017887 -
Seca11g01312 129 Pfam TCP family transcription factor 50 114 IPR017887 -
Seca11g01312 129 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01312 Seca-Chr11 14012334 14013289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01312 34 129 TCP Transcription Factor Family AT5G60970 64.583 2.73e-39 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Seca11g01312 TCP 4.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01312 - - pvu:PHAVU_003G183700g 171.014