Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01291 ATGGAATCTTGGAGCTATGTTTCTGAAGAAAAGGGGTATGTCTCCAATGATGCACTCTCGCTTCCCAATACTCTTGGGAGAACTAAAAATTCATTCTTGGGTTGGGAATTGAAAACCCCATGTAGTTTTTCCAACGACATGTTAGCCTTGGGTCAACAAAACGTTGGGAATCAAGGTTCTGAGGAATTGGGTGTTCCTGAAATGTTGGGGAAACAATTCTCTGATGATCTGATTGGGAGTGTTCCGAGCAGAAAGGATGGTAGCAGAATCACTAGTACTGTTATGGCTTCTCCATATGCGTTTTCTGTAAGAGGGGACTCCAATTCCAAGCTTTCAAACTCTGTGGTGGACTCTAACGGTAGGGATTCCCTCATTGATTTGAAGCTAGGACGATTTGCTGATCATGGAGATGCCATTGGTCCAACATTTTCCAAAGGAGCACCAATTTTGTCTTCTTCTGAGTCAGCAACGCCCCCTAAGAGAGTTAGAGCTTCAGGGGTGCATTCACAGACTGCATACTGCCAAGTCTATGGCTGTAACAAGGATCTCAGCACCTGTAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTCCCACAGTTATAGTGAATGGTATTGAGCAGAGGTTTTGTCAGCAATGCAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGCAGCTGCCGTAGACGCCTTGCAGGCCATAATGAGCGTAGAAGAAAGCCACAAGCGGGTATTCACTCTGGAAAGTCCGGGAGGTTGCTTCGGCCATGTGGTGGTAATAATATAATATATATTCTGAAATTGGATAGCAGATTCCAGGGAACCAAGCTAACACCAGCATCTTTTATCCGCCCAGAGATGCTCCCTAGTGGGGTCATGCATTCTGACAGATATGGAATAAGTGGCTTCTGGAGACCTATAAAAGCAGAATATGGGGCTGGCTTTAGGCATCTTTCTTCTATGCCTATTACCAATGGACATCCTCTGTCAAGATCTCCATTTCCTTCATACAGCCAAAAACAATTTCCCTTTCTTCATGAAAATGGTGCCACATCCACTACAGGAACTGGAAGCAGCATCTTCTGTGAAAACAACAGCCAATATCCACCTGCCCTTGGGGCTCATAATTCTGGGTTACAACCACTATTCCATGACACCTTAGGAACTGAGGACTTCAATGTTTTTGTTACAGCATCGACTGTTCAAGGATTGTCGGGAATTTCAGACTCATGTTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCAACAGGAATTCCCTTGGCTCACACTTTGCTTATCCCAAGCAGCCATAGTCATCACTATAGCATGAGTCAGGTCTCTGAAAAGATAGGAATAAACTCGCAGTCTTCTTCAAGCCGGGTGTCAGATAGGTTTCCATCAGAACTAAATTCTGCAGATGGAGGTCATCTTGGTCAAGTATTGATATCAGACAATAATGACATAGTCAACTTTGAAATGGCAGATGGGATTTTCCAAGATTCAGATTTTGTGAATGTGAAGGATCGTCTTCACTGTGAAGATGGTGCAACCATAGACTTGCTCCAACTGTCATCACAGCTCCAGCGAGTTGAGCATCAGAGGCAATCCTTGCAGGTGAAGCAAGAAAATGATTCTTCTTGCACTCTCCGGATTACTTAA 1698 0.4417 MESWSYVSEEKGYVSNDALSLPNTLGRTKNSFLGWELKTPCSFSNDMLALGQQNVGNQGSEELGVPEMLGKQFSDDLIGSVPSRKDGSRITSTVMASPYAFSVRGDSNSKLSNSVVDSNGRDSLIDLKLGRFADHGDAIGPTFSKGAPILSSSESATPPKRVRASGVHSQTAYCQVYGCNKDLSTCKDYHKRHKVCEVHSKTPTVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRRRLAGHNERRRKPQAGIHSGKSGRLLRPCGGNNIIYILKLDSRFQGTKLTPASFIRPEMLPSGVMHSDRYGISGFWRPIKAEYGAGFRHLSSMPITNGHPLSRSPFPSYSQKQFPFLHENGATSTTGTGSSIFCENNSQYPPALGAHNSGLQPLFHDTLGTEDFNVFVTASTVQGLSGISDSCCALSLLSSQSQNSSSQSTGIPLAHTLLIPSSHSHHYSMSQVSEKIGINSQSSSSRVSDRFPSELNSADGGHLGQVLISDNNDIVNFEMADGIFQDSDFVNVKDRLHCEDGATIDLLQLSSQLQRVEHQRQSLQVKQENDSSCTLRIT. 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01291 565 MobiDBLite consensus disorder prediction 144 164 - -
Seca11g01291 565 ProSiteProfiles Zinc finger SBP-type profile. 171 248 IPR004333 GO:0003677
Seca11g01291 565 MobiDBLite consensus disorder prediction 238 257 - -
Seca11g01291 565 Pfam SBP domain 174 247 IPR004333 GO:0003677
Seca11g01291 565 Gene3D - 164 235 IPR036893 GO:0003677|GO:0005634
Seca11g01291 565 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 95 551 IPR044817 GO:0003677
Seca11g01291 565 Coils Coil 533 553 - -
Seca11g01291 565 FunFam Squamosa promoter-binding-like protein 14 165 235 - -
Seca11g01291 565 SUPERFAMILY SBT domain 172 251 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01291 Seca-Chr11 13831721 13835058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01291 125 301 SBP-box Gene Family AT1G69170 53.371 8.27e-52 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca11g01291 SBP 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01291 - - gmx:100817547 813.142