Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01289 ATGGGAAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATTAACAGGCAAGTTACTTTTGCCAAGAGAAGAAATGGGCTCCTCAAGAAGGCCTATGAGCTTTCAGTCCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACCGTGGCAAGCTCTATGAGTTCAGCAGCACCTCCAGCATAGTGAAAACACTGGAGAGATACCAGAAGTACAGCTACAGTTCACTGGAGACTAACAGACCAACCAATGACACTCAGAAAGTATCTAATAACAAATATACATGTCACTGGCAGAACTATCAGGAATATGTGAGATTAAAAGCAAAGGTAGAAGTCCTGCAGCGTTCACAAAGGAACCTTCTTGGGGAAGATCTTGTCCATATGAATACAACTGAGCTCGAGCAGCTTGAGAATCAACTGGAGGTAGCACTGAAGAATATTAGGTCAACAAAGACTCAATTCATGCTTGATCAACTCACAGATCTTCACAACCGGGAAGCAGTGCTTGTTGAAACTAATAATGCGTTAAGGAGTAAGTTAGAAGAAACTAATATCTCACAAGTTCCAATGAGACTGGGTTTGGAATGTGGAGAGGCTAATATCCATTACAACCGTTTTCCTCCTCAATCAGAAGGGTTTTTCCAGCCTGTGGAAGTGAATCCCAACTTGCAAATTGGATACAATGCGGGTACTGATGATGTAAACGTTGGAGCTTCATCCTTAAATGTCCATGGATTCGTCTCTGGGTGGATGCTTTGA 765 0.4288 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSSTSSIVKTLERYQKYSYSSLETNRPTNDTQKVSNNKYTCHWQNYQEYVRLKAKVEVLQRSQRNLLGEDLVHMNTTELEQLENQLEVALKNIRSTKTQFMLDQLTDLHNREAVLVETNNALRSKLEETNISQVPMRLGLECGEANIHYNRFPPQSEGFFQPVEVNPNLQIGYNAGTDDVNVGASSLNVHGFVSGWML. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01289 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca11g01289 254 FunFam MADS-box transcription factor 1 13 90 - -
Seca11g01289 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca11g01289 254 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
Seca11g01289 254 ProSiteProfiles K-box domain profile. 98 188 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca11g01289 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca11g01289 254 Coils Coil 128 155 - -
Seca11g01289 254 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Seca11g01289 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Seca11g01289 254 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Seca11g01289 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca11g01289 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca11g01289 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca11g01289 254 Pfam K-box region 100 182 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca11g01289 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01289 Seca-Chr11 13777551 13782925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01289 1 254 MADS-box Gene Family AT5G15800 54.579 3.90e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca11g01289 K-box 4.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01289 K09264 - gmx:100797819 384.03