Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01288 ATGGAAAACTCTAATGATGTAGTCATTGGTAATTCAAATGATGATATAGAGCCTTTTCGTGTTGTTAGTTCTGATGATAGTGCAAGTGATGAGGAAAATAATGCTATTGGTTCTGATAGTGATAGTGAAAGTAGTATTGGAGGTGAAAATTTTAAAAGAATAGATGAATTGACTTATGAAGACATTATAGGGCTAGATTTTGGTAGTGAAAAAGAAGCGGGTGATTTTTATGAGACTCATGCAAAGAGCATGGGTTTTGCAATAAGGAAAGATGATGTAAAGAAGGATGTTAGGGGCCAGGTTCGAATGCGACAATTTGTTTGCAGTAGGGAGGGTCAGAGGAACAAAAAACATTTAATGCGGGTTGATAGAAAAAGGGAACATAGACGATTGACTCGGACTTCATGTCGTGCTAAACTCCGTGTTCACTATAATTGA 438 0.3676 MENSNDVVIGNSNDDIEPFRVVSSDDSASDEENNAIGSDSDSESSIGGENFKRIDELTYEDIIGLDFGSEKEAGDFYETHAKSMGFAIRKDDVKKDVRGQVRMRQFVCSREGQRNKKHLMRVDRKREHRRLTRTSCRAKLRVHYN. 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01288 145 Pfam FAR1 DNA-binding domain 75 144 IPR004330 -
Seca11g01288 145 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 12 143 - -
Seca11g01288 145 MobiDBLite consensus disorder prediction 1 49 - -
Seca11g01288 145 MobiDBLite consensus disorder prediction 28 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01288 Seca-Chr11 13775351 13775863 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca11g01288 FAR1 4.3e-13 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01288 - - ccaj:109792835 146.747