Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01276 ATGCAGGAAATACATTCCATCGGAGGAGGAGGCAGGTTCTTCGGCGGAGACAGGAGGCTTAGACCTCACCACCAACAGAACCACCAGAACCACCAAGCCCTCAAGTGTCCACGTTGCGACTCTCTCAACACCAAGTTCTGTTACTACAACAACTACAACCTCTCTCAGCCTCGTCACTTCTGCAAAAACTGCCGTCGTTACTGGACCAAAGGCGGCGTCCTCCGTAACGTCCCCGTCGGCGGTGGTTGCCGCAAATCCAAGCGCTCCAACAAGCCTAAGAACTCCACTTCCTCTGAACCCGCCGCCGCACCGACGACGACAGCTCCGTCGGAGCCGGAGCACAAGTCCAACTCCCATTCTAGCAGCGAGAGCTCCAGCCTCACCGCCGCCGCCGCCGCAACGGAGGCGGTGTCAGCGCCGACGTTGAACACTGACTCCAACAACAACAAAATGTTAGAGAGCATGCACGAGTCGAAGCTCTTGATCTCTTCAAACGCTGGTTTGGAAACGGGAAGTACTGCGCTGGAGCAAGGAACAGGGGACTGTGGTATTTTCTCTGAGATTGGGAACTTCACCAGCTTGATCGCTTCCACCAACGAGACATTGCCGTTTGGGTTCGGTAACGGTATCCCTGATGCGTCGTCGTTTCATTGGCAGCACCACAAGGTCACCAACAACATGAGTGAAGAATTCAAGTTACCGGAGAATCTCGGTGCTGTTGGGTCCTTGCTCGATCAGACCGTTGATTTGTCAAGCCTGCAAAGTAAAACTGGAAACGGTGGATTTGGACCGTTGGATTGGCATAGCGGTACGGATCAAGGTTTGTTTGATCTTCCTAACACCGTTGATCAGGCTTACTGGAGTCACACTCATTGGTCTGATCAGGACAATTCTACTCTCTTTCATCTTCCCTGA 915 0.5322 MQEIHSIGGGGRFFGGDRRLRPHHQQNHQNHQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKSKRSNKPKNSTSSEPAAAPTTTAPSEPEHKSNSHSSSESSSLTAAAAATEAVSAPTLNTDSNNNKMLESMHESKLLISSNAGLETGSTALEQGTGDCGIFSEIGNFTSLIASTNETLPFGFGNGIPDASSFHWQHHKVTNNMSEEFKLPENLGAVGSLLDQTVDLSSLQSKTGNGGFGPLDWHSGTDQGLFDLPNTVDQAYWSHTHWSDQDNSTLFHLP. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01276 304 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 196 IPR045174 GO:0003700|GO:0006355
Seca11g01276 304 MobiDBLite consensus disorder prediction 78 149 - -
Seca11g01276 304 MobiDBLite consensus disorder prediction 1 33 - -
Seca11g01276 304 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Seca11g01276 304 MobiDBLite consensus disorder prediction 93 149 - -
Seca11g01276 304 Pfam Dof domain, zinc finger 32 88 IPR003851 GO:0003677|GO:0006355
Seca11g01276 304 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01276 Seca-Chr11 13673312 13674226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01276 17 304 C2C2-Dof Transcription Factor Family AT5G60850 47.279 1.12e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca11g01276 zf-Dof 3.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01276 - - gmx:778097 347.821