Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01272 ATGGAGCTTTCTCAAGCGCATCCCTGTGGAAGGGAAGGGAGGAAACCGACGCACGACTTTCTGTCACTCTACAGTAATTCAACTGCCCAACAAGATCCAAGGCCACCTTCTTCTCAAGGAAGTTGCCTCAAGACCCATGATTTCTTGCAACCACTAGAACGGGTAGAAACGAAAGCTAGTGCCAAGGAAGAAGCCACAGAAGAAATATCATCGGTGGTTCAAAAGCCACCATCTTTAGCAGCACCAGCTTCAGTTGAGCACCTCTTACCTGGAGGAATTGGGACTTACAGTATTAGCCACATTTCCTATTTCAATAATAATCAAAGGATTCCAAAGCCAGAGACATCCCTTTTCACTGTGCATCAAGCAACTAGTGCGGATAGAAATGATGACAACTCCAACTGCAGTTCATATACTTCAAGCGGTTTCACTTTGTGGGAAGAGTCTGCGATAAAAAAGGGAAAGACAGGAAAGGAGAATAATGTAGGCGAGAAACCCATTGTAGGAGCGACAGAGTCTGTGGCAAAGGGGCAGTGGACATTGACAGAGCGAACATCACAGTCGTTTTCTAACAATCGTCACAGCAGCTTCAACTCCCACTCTTCATCTCAGACAATTGGACAGAAGAGTCAGAGTTTTATTGAAATGATGAAGTCTGCAAAGGAGGATTGTACCCAGGATGAAGAGCTAGAAAACGAAGACACCTTTTTTCTTAAGAAAGAATCCTCAAATACCCCAAGAGAAGAACTGAGGGTGAAAGTGGATGGGAAGAGTACTGATCAAAAGCCAAACACGCCAAGATCAAAACATTCTGCAACAGAGCAGCGGAGAAGAAGCAAAATTAATGACAGATTCCAGATGCTACGAGAGCTTATTCCACACAGTGACCAAAAGAGGGACAAAGCATCTTTTTTGTTAGAGGTCATTGAGTACATTCATTTTTTACAAGAGAAGGTGCATAAATATGAAGGTTCATTCCAAGGGTGGAATAACGAGCCTGAAAAATTGATTCCATGGAGAAATAATGACAGGCCAGTAGAAAATTTCCAATCTCGTGGCACAAATAGTGGGACAAGTCCATCTCCAACATTGTTGTTTGCCTCGAAGGTTGACGAGGTCTCCCCAACAATACCTGGAAGTACCCAAAATGTAGAATCTGGCTTGAGCACAGCAACTAACTTCAAGACAATGGATCATCAGTCTGGAATAATGAACAGGGCTTTTCCAATTCCTATTTCTTCCCAACCAAATTTCTTCACTCCAACTCAAATCGGTAGTCCAGGTGGAGTAGTGTCTCAGCTCACACATAGATTGGCATCTGATGCAGAGAACACCATATATCAACCTTCAACGGATTCTCAGACTAAAACTGCTGCCAGTGGAAAGCTGAAAGAGAAAGACCTCACTATTGAAGGTGGTGCCATTAGCATATCAAGTGTGTACTCAAAAGGTTGTGTTGGACATTATGTGCATTCATCTCCTAGTGAGCATCCATGGATAGAGAATGCAGATATTAAAATAAGTTTATTATGCCTGGACAGGTTGTTGGATACACTTACACATGCCTTACAGAGTTCGGGGGTGGATTTGTCACAGGCTAACATTTCAGTGCAAATTGAACTTGGTAAGCAAGCAAGCATCAGACCAACGGTACCAATGTCAATGTGCGGTGCTAAGAATGATGGGGTTCCTTCTAACAATCAAAGGATGATGCGCTCTAGAGGTGCTGGCTCTGAGAAGTCTGATCAAGCAGCAGTAAAGAAGCTAAAGGCGTGCAGAAGTTAA 1785 0.4331 MELSQAHPCGREGRKPTHDFLSLYSNSTAQQDPRPPSSQGSCLKTHDFLQPLERVETKASAKEEATEEISSVVQKPPSLAAPASVEHLLPGGIGTYSISHISYFNNNQRIPKPETSLFTVHQATSADRNDDNSNCSSYTSSGFTLWEESAIKKGKTGKENNVGEKPIVGATESVAKGQWTLTERTSQSFSNNRHSSFNSHSSSQTIGQKSQSFIEMMKSAKEDCTQDEELENEDTFFLKKESSNTPREELRVKVDGKSTDQKPNTPRSKHSATEQRRRSKINDRFQMLRELIPHSDQKRDKASFLLEVIEYIHFLQEKVHKYEGSFQGWNNEPEKLIPWRNNDRPVENFQSRGTNSGTSPSPTLLFASKVDEVSPTIPGSTQNVESGLSTATNFKTMDHQSGIMNRAFPIPISSQPNFFTPTQIGSPGGVVSQLTHRLASDAENTIYQPSTDSQTKTAASGKLKEKDLTIEGGAISISSVYSKGCVGHYVHSSPSEHPWIENADIKISLLCLDRLLDTLTHALQSSGVDLSQANISVQIELGKQASIRPTVPMSMCGAKNDGVPSNNQRMMRSRGAGSEKSDQAAVKKLKACRS. 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01272 594 MobiDBLite consensus disorder prediction 560 574 - -
Seca11g01272 594 FunFam BHLH domain class transcription factor 263 335 - -
Seca11g01272 594 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 265 315 IPR011598 GO:0046983
Seca11g01272 594 CDD bHLH_AtBIM_like 264 340 - -
Seca11g01272 594 MobiDBLite consensus disorder prediction 1 44 - -
Seca11g01272 594 Gene3D - 263 336 IPR036638 GO:0046983
Seca11g01272 594 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 498 591 IPR044295 GO:0003700|GO:0006351|GO:0046983
Seca11g01272 594 MobiDBLite consensus disorder prediction 20 44 - -
Seca11g01272 594 Pfam Helix-loop-helix DNA-binding domain 267 316 IPR011598 GO:0046983
Seca11g01272 594 SMART finulus 271 321 IPR011598 GO:0046983
Seca11g01272 594 MobiDBLite consensus disorder prediction 185 215 - -
Seca11g01272 594 MobiDBLite consensus disorder prediction 559 594 - -
Seca11g01272 594 MobiDBLite consensus disorder prediction 185 281 - -
Seca11g01272 594 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 263 334 IPR036638 GO:0046983
Seca11g01272 594 MobiDBLite consensus disorder prediction 232 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01272 Seca-Chr11 13598236 13606882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01272 1 546 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G08130 47.972 2.73e-123 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca11g01272 HLH 5.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01272 - - gmx:100808016 820.076