Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01271 ATGTCTGGGACGTCGCCGTCGGCTTCCCCAAAGAAGCGCCTCAAATCCCAAATGGAAGAAGAAGATGGTGTTTGTTGCGGGATTTGCTATGCTGAGCGTGGGGTTTCGATCGCGGGGGAAATTGATTGCTGTAACCACTATTTCTGCTTCGTTTGCATCATGGAATGGGCCAAACATGAGTCTCGTTGCCCAATTTGTCGCCAGAGATTCTCCAACGTTCGCAGGCCCCCTAAGCATGGCGTCTTTTCTTCCTCAAGGGACGTTAAGGTCCCTCTTCGTGACCAGGTTTACCATCCTTATGGAAATATGTCAACCGGTCCTGTTGAGTCTTCTGCTGAAGTCAAATGCAGTATCTGTCATGTTGGGACAGATGAACATCTTCTACTACTTTGTGATCTTTGTGATGGTGCTTCACATACATACTGCGTTGGCCTGGGATATACTGTACCTGAAGGTGATTGGTTTTGTCATGATTGTGCTATTTCCCGGGAGACCAATACCAATCAAGAATCAGACCTCATGCCAACAGCTGAGCCGAGTGTAACCGTCTTTGATATTGTGAGGGAACCAAACAGCCGGGTGGTTAGAAGACCAACACAGTCATCTCCTTTACAACAAAATCAGTCACCTCCTTTACAACAAAACCAGTCATCTCCTTCTGTTATGCCTTTTCCTGATAGGATGAGTAGAGTCAAAGGTAAAACCCCTATGTCAGGTTTCGAAAATGCCCAGCGTAATATACAGGCGCTCCGTGAAAATTGGAATGCTTTGAGAAGTGGTTCATTACAGTTCCATTGCAATTCGTTTAAATCTGGTGGCTCAGGTAGTCAAAAACAAGATTCTGGTTCCTTATCACGTCGGAAATTAGATGATTCACATCCAATGGCTTCCACAAGCCTTCAACAATCCACTGTCCAAGGTGGCCATTCTAGTAATATGTTGAGTGATGGAGGTTTGGAAGATGTTGAGAAGGCTTGGAAAATGATGGACAGGGCAAAGATGATGCGACAGACTCATCAAAGAACTAGCAGGATTCCACAAGGAATGGATAATCCCTCATGTAGTGGAGCTAGAGAAAAATCAATTGCACAACATAATTACCCAGAATTGAAAAATCAACGGCCTGGAAAATTAGACTTGCGCACTAGAATGAAGAAGCAGTGTGACTATTCTAGTCTCAACAAGAATATGGAAAACCAGTGGTCTCTGAAGTTGGGAGAGAAAAAGCAAAGTAGGGCCACATGTGAGGAGATGATACAACATGTGGGGGACCATACTACTCATTCAGAAGGATATTGTGAACTTGCATTGCCCAAAAAGACCCATATTAGTATCCAGGGTGTTCCCTGTCGTGAAGATGGAGGGATAAATGTTTCTAAGGAACAAAGGCAGTCTGCTTGCTTGGCAACTTCAATAGGTTCAGCTCCCTCTAGCAGTAAATTTGGTAGTGTGTTCCCCTCTAATAAAGATGTGGATATTTTCAATGAAGAAAAGAGGTTGGCTAAAAGCTTTGGAGATGGGAACACAAGAAAAATTGAAGATGCAAAGTCCGATATCCAGTCTCTTGTTAAACTGAATCTGAAGTCCTTAACCAGAGATAAACGGTTAGGTGTCGAAACCTTCAAGGCAGTTGCAAGGCAGGCCACCCATACTATCTTGGCTGCTTGCAGTTCCAAGCAGCAGAACTCCTCAAGCTCAGTATGCAGCCATAGTGACCATACTCCGCAGTTTCAGAAATCTACTTTAATGCCTAATTGTTGTCAACAATGCTTTTCTGTCTTCGTAAACAATGTTGTCAATTCCATCATGTTGGAGAAAGTGGGTTGTGCTTAA 1833 0.4386 MSGTSPSASPKKRLKSQMEEEDGVCCGICYAERGVSIAGEIDCCNHYFCFVCIMEWAKHESRCPICRQRFSNVRRPPKHGVFSSSRDVKVPLRDQVYHPYGNMSTGPVESSAEVKCSICHVGTDEHLLLLCDLCDGASHTYCVGLGYTVPEGDWFCHDCAISRETNTNQESDLMPTAEPSVTVFDIVREPNSRVVRRPTQSSPLQQNQSPPLQQNQSSPSVMPFPDRMSRVKGKTPMSGFENAQRNIQALRENWNALRSGSLQFHCNSFKSGGSGSQKQDSGSLSRRKLDDSHPMASTSLQQSTVQGGHSSNMLSDGGLEDVEKAWKMMDRAKMMRQTHQRTSRIPQGMDNPSCSGAREKSIAQHNYPELKNQRPGKLDLRTRMKKQCDYSSLNKNMENQWSLKLGEKKQSRATCEEMIQHVGDHTTHSEGYCELALPKKTHISIQGVPCREDGGINVSKEQRQSACLATSIGSAPSSSKFGSVFPSNKDVDIFNEEKRLAKSFGDGNTRKIEDAKSDIQSLVKLNLKSLTRDKRLGVETFKAVARQATHTILAACSSKQQNSSSSVCSHSDHTPQFQKSTLMPNCCQQCFSVFVNNVVNSIMLEKVGCA. 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01271 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 181 IPR013083 -
Seca11g01271 610 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 89 IPR013083 -
Seca11g01271 610 ProSitePatterns Zinc finger RING-type signature. 44 53 IPR017907 -
Seca11g01271 610 MobiDBLite consensus disorder prediction 294 313 - -
Seca11g01271 610 MobiDBLite consensus disorder prediction 190 239 - -
Seca11g01271 610 MobiDBLite consensus disorder prediction 194 223 - -
Seca11g01271 610 MobiDBLite consensus disorder prediction 336 357 - -
Seca11g01271 610 SMART PHD_3 115 160 IPR001965 -
Seca11g01271 610 SMART ring_2 26 66 IPR001841 -
Seca11g01271 610 SUPERFAMILY RING/U-box 15 78 - -
Seca11g01271 610 MobiDBLite consensus disorder prediction 268 282 - -
Seca11g01271 610 PANTHER F18C1.6 PROTEIN 15 607 - -
Seca11g01271 610 Pfam PHD-finger 116 160 IPR019787 -
Seca11g01271 610 ProSiteProfiles Zinc finger RING-type profile. 26 67 IPR001841 -
Seca11g01271 610 MobiDBLite consensus disorder prediction 268 317 - -
Seca11g01271 610 ProSiteProfiles Zinc finger PHD-type profile. 113 162 IPR019787 -
Seca11g01271 610 SUPERFAMILY FYVE/PHD zinc finger 109 163 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01271 Seca-Chr11 13569736 13573957 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01271 116 163 C2H2 Transcription Factor Family AT3G01460 40.816 7.17e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca11g01271 PHD 1.3e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01271 - - gmx:100808541 788.104