Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca11g01270 ATGGCAGATGTCACCTACCTCCTTCACCACCATGAACCCGACGATGACCAAACCCTAATCCCCTTACCCTTCTGGTCCCCTCATCACGATTTCGATTTCGATTTCGATTTCTACTCTTCCGATCCTGAATTCCCTCCCAATTTCTCCCGCGAAAACCAGGTCAATTTCGTCATGGACCTTTTCCAACAGCGCATCGAGCAATCCCAGGTCACCACCGATCCCGTCTCCCAATCCCTAAACGACTCCGTTTTCGATGGTTTAGAATTTGGTCTCGATTTAGGGTTCGCCCCCGACGACGCCGACGATTTCTTCATCAGTACTAGGGTTTCATTACCCGGATCCGAATCCGGCGATGCTCCTTTCGACGACAACTGCGTCCGCCTCGCCGGTTTCGGATCAGACTCCGACGATGAAGATGCCAACACTGGGATCCTAGGGATCTGCATGCATTCCGACGAAGAGTATCACGAAGACGACGACGTTTCTACCATCCCTCTCTGTTGGGACTCGCTTCACTTGGAGGATAACAGGGAGAACAACAACTACGAGGATTTCGAGTGGGAGGAAGTGGACGGTCGCGTCGACGAGAGGGAGGTTCTCAGCATTTTCGATGACAGGTCAGTTTCCGTTTCCGTTTCTCCAATAATGACTGGAATGGAAGAAGAAGAAGAAGAACAAGGAGAAGAAGTTAGCATTGTTAGGTTAGATGGTGATTCTGGTGAAGGCATGGAAAATTTAGAGTGGCAAGTGTTGTTGAATTCCACCACTATAGGCACAAACCCTGATCTGGAGCAAGATGCAGAGCCTTATTTTGGGGACAATGATGATTACATTTACACTGCAGAGTATGAAATGATGTTAGGTCAATTTGGTCAATTTGGTGAGAACGATAACCCCTTAATTGGTAGGCCTCCTGCTTCTGTTTCCGTTGTTCAGAACCTTCCGTCTGTGGTTGTGACCCAACAAGACGTGGACAACAACAATGCACTCTGTGCGGTTTGCAAAGATGAGTTTGGTGTTGGGGAAGAAGTGAAACAGTTGCCGTGTTCGCATCGCTACCATGGTGATTGCATTGTGCCTTGGTTGGGGATTCGGAATACTTGCCCTGTTTGTCGTTATGAGTTCCCCACTGATGATGCTGAATATGAGCTTAGGAGGGTCCAAAGATCTTCCCGGAGCATTTAA 1185 0.4852 MADVTYLLHHHEPDDDQTLIPLPFWSPHHDFDFDFDFYSSDPEFPPNFSRENQVNFVMDLFQQRIEQSQVTTDPVSQSLNDSVFDGLEFGLDLGFAPDDADDFFISTRVSLPGSESGDAPFDDNCVRLAGFGSDSDDEDANTGILGICMHSDEEYHEDDDVSTIPLCWDSLHLEDNRENNNYEDFEWEEVDGRVDEREVLSIFDDRSVSVSVSPIMTGMEEEEEEQGEEVSIVRLDGDSGEGMENLEWQVLLNSTTIGTNPDLEQDAEPYFGDNDDYIYTAEYEMMLGQFGQFGENDNPLIGRPPASVSVVQNLPSVVVTQQDVDNNNALCAVCKDEFGVGEEVKQLPCSHRYHGDCIVPWLGIRNTCPVCRYEFPTDDAEYELRRVQRSSRSI. 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca11g01270 394 SUPERFAMILY RING/U-box 311 378 - -
Seca11g01270 394 FunFam E3 ubiquitin-protein ligase RING1-like 292 378 - -
Seca11g01270 394 CDD RING-H2_RNF126-like 331 372 - -
Seca11g01270 394 Pfam Ring finger domain 331 372 IPR001841 -
Seca11g01270 394 ProSiteProfiles Zinc finger RING-type profile. 331 372 IPR001841 -
Seca11g01270 394 SMART ring_2 331 371 IPR001841 -
Seca11g01270 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 295 378 IPR013083 -
Seca11g01270 394 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 209 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca11g01270 Seca-Chr11 13539601 13540785 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca11g01270 8 378 C3H Transcription Factor Family AT5G60820 39.573 3.20e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca11g01270 - - pcin:129307991 410.609